Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleosome assembly

Term: GO:0006334  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene78624 SustainPine v3.0 246
AutoFact: Histone H4 n=1 Tax=Camellia sinensis RepID=F4YF87_CAMSI 9.0e-13
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 2.799e-09
Putative N-terminus
sp_v3.0_unigene79373 SustainPine v3.0 376
AutoFact: Histone H3 n=3 Tax=Agaricales RepID=B0DIH1_LACBS 9.0e-16
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
C-terminus
sp_v3.0_unigene79525 SustainPine v3.0 203
AutoFact: Nucleosome/chromatin assembly factor group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9IJV5_POPTR 1.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Misassembled
sp_v3.0_unigene79581 SustainPine v3.0 192
AutoFact: Histone H3 n=1 Tax=Zea mays RepID=B6T1G0_MAIZE 3.0e-06
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 9.023e-06
C-terminus
sp_v3.0_unigene81242 SustainPine v3.0 317
AutoFact: PREDICTED: similar to Late histone H2A.2.2 n=2 Tax=Hydra magnipapillata RepID=UPI0001924B8D 2.0e-23
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 3.157e-09
N-terminus
sp_v3.0_unigene82081 SustainPine v3.0 515
AutoFact: histone H1/green fluorescent protein S65T variant fusion protein [Expression vector pMF280] 6.0e-14
Sma3: Histone H1 2.274e-21
coding
sp_v3.0_unigene83011 SustainPine v3.0 445
coding
sp_v3.0_unigene83643 SustainPine v3.0 282
AutoFact: HC2 multi-domain protein 3.0e-08
coding
sp_v3.0_unigene86619 SustainPine v3.0 326
AutoFact: HC2 multi-domain protein 2.0e-11
coding
sp_v3.0_unigene86716 SustainPine v3.0 303
AutoFact: BASP1 multi-domain protein 4.0e-12
Sma3: Histone H1 4.623e-38
coding
sp_v3.0_unigene93825 SustainPine v3.0 604
AutoFact: pfam00956, NAP, Nucleosome assembly protein (NAP) 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleosome/chromatin assembly factor group 4.936e-14
N-terminus
sp_v3.0_unigene93984 SustainPine v3.0 837
AutoFact: histone H4 [Hyacinthus orientalis] 5.0e-38
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene94220 SustainPine v3.0 702
AutoFact: Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH 2.0e-39
FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2B 3.103e-33
C-terminus
sp_v3.0_unigene94432 SustainPine v3.0 566
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene94788 SustainPine v3.0 928
AutoFact: Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH 1.99993e-41
FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene94863 SustainPine v3.0 368
AutoFact: Histone H2A n=1 Tax=Picea sitchensis RepID=A9NXR7_PICSI 1.0e-16
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative N-terminus
sp_v3.0_unigene95192 SustainPine v3.0 1288
AutoFact: MYB transcription factor MYB107 [Glycine max] 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Single myb histone 4 4.259e-08
Complete
sp_v3.0_unigene95574 SustainPine v3.0 573
AutoFact: leucine-rich repeat/extensin [Nicotiana plumbaginifolia] dbj|BAF48664.1| leucine-rich repeat/extensin [Nicotiana plumbaginifolia] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Extensin-like protein 4.04e-31
Internal
sp_v3.0_unigene95713 SustainPine v3.0 818
AutoFact: Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH 2.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 1.27e-34
Putative Complete
sp_v3.0_unigene96128 SustainPine v3.0 521
Sma3: Histone H2A 1.224e-08
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain