Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleosome assembly

Term: GO:0006334  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene63167 SustainPine v3.0 135
AutoFact: Nucleosome/chromatin assembly factor group A n=2 Tax=Zea mays RepID=Q8L8G5_MAIZE 7.0e-08
FL-Next: tr=Nucleosome assembly protein 1-like protein 2; Oryza sativa (Rice). 0.0
Sma3: Nucleosome assembly protein 1-like protein 2 2.212e-09
Internal
sp_v3.0_unigene65434 SustainPine v3.0 170
AutoFact: Histone H2B protein (Fragment) n=1 Tax=Pinus pinaster RepID=Q8VX93_PINPS 4.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 3.258e-32
Internal
sp_v3.0_unigene65568 SustainPine v3.0 222
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 4.0e-24
FL-Next: tr=Putative histone H1; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H1 1.908e-22
Internal
sp_v3.0_unigene66190 SustainPine v3.0 192
AutoFact: Unassigned protein
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene66710 SustainPine v3.0 396
AutoFact: histone H4 [Hyacinthus orientalis] 3.0e-39
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene66731 SustainPine v3.0 399
AutoFact: Histone H2A n=1 Tax=Oryza sativa Japonica Group RepID=B9GDH1_ORYSJ 4.0e-09
FL-Next: sp=Histone H2A; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2A 0.0
Putative N-terminus
sp_v3.0_unigene66906 SustainPine v3.0 157
AutoFact: PREDICTED: histone H4-like n=1 Tax=Pan troglodytes RepID=UPI00020E3732 3.0e-16
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 3.119e-09
Putative N-terminus
sp_v3.0_unigene67064 SustainPine v3.0 278
AutoFact: Histone H3 n=3 Tax=Eukaryota RepID=B6SJQ5_MAIZE 8.0e-11
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
C-terminus
sp_v3.0_unigene67293 SustainPine v3.0 289
AutoFact: Histone H2A n=1 Tax=Sorghum bicolor RepID=C5YYL4_SORBI 1.0e-13
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative N-terminus
sp_v3.0_unigene67553 SustainPine v3.0 247
AutoFact: Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA 3.0e-18
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 1.96182e-44
C-terminus
sp_v3.0_unigene67734 SustainPine v3.0 343
AutoFact: Putative histone H1 n=1 Tax=Cryptomeria japonica RepID=Q1XG59_CRYJA 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene67828 SustainPine v3.0 262
AutoFact: Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA 8.0e-12
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
C-terminus
sp_v3.0_unigene67860 SustainPine v3.0 365
AutoFact: Putative histone H1 n=1 Tax=Cryptomeria japonica RepID=Q1XG59_CRYJA 5.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative histone H1 9.935e-09
N-terminus
sp_v3.0_unigene67863 SustainPine v3.0 407
AutoFact: Putative histone H1 n=1 Tax=Cryptomeria japonica RepID=Q1XG59_CRYJA 7.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative histone H1 1.696e-09
N-terminus
sp_v3.0_unigene68501 SustainPine v3.0 285
AutoFact: Histone H2B protein (Fragment) n=1 Tax=Pinus pinaster RepID=Q8VX93_PINPS 4.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 2.432e-38
Putative N-terminus
sp_v3.0_unigene68846 SustainPine v3.0 302
AutoFact: Histone H2B (Fragment) n=1 Tax=Asparagus officinalis RepID=Q43724_ASPOF 1.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 3.877e-36
C-terminus
sp_v3.0_unigene68992 SustainPine v3.0 256
AutoFact: Histone H2B.5 n=3 Tax=Magnoliophyta RepID=H2B5_WHEAT 6.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 6.727e-28
N-terminus
sp_v3.0_unigene69106 SustainPine v3.0 225
AutoFact: Histone H2A n=2 Tax=rosids RepID=E3NYV0_9FABA 1.0e-07
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
C-terminus
sp_v3.0_unigene69154 SustainPine v3.0 243
AutoFact: Histone H3 n=1 Tax=Oryza sativa Japonica Group RepID=C7J3T3_ORYSJ 5.0e-21
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 5.75e-19
N-terminus
sp_v3.0_unigene69443 SustainPine v3.0 226
AutoFact: Histone H3 n=1 Tax=Chlorella variabilis RepID=E1ZRC8_9CHLO 7.0e-08
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 2.865e-07
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain