Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleosome assembly

Term: GO:0006334  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene53199 SustainPine v3.0 429
AutoFact: Single myb histone 4 n=2 Tax=Zea mays RepID=Q6WLH2_MAIZE 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Single myb histone protein 3.818e-08
Putative N-terminus
sp_v3.0_unigene53212 SustainPine v3.0 384
AutoFact: Histone H2A n=8 Tax=Picea sitchensis RepID=A9P2B3_PICSI 2.0e-09
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
N-terminus
sp_v3.0_unigene53546 SustainPine v3.0 365
AutoFact: Histone H2B protein (Fragment) n=1 Tax=Pinus pinaster RepID=Q8VX93_PINPS 8.0e-09
FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2B 1.695e-23
Putative N-terminus
sp_v3.0_unigene53729 SustainPine v3.0 389
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 1.089e-34
C-terminus
sp_v3.0_unigene54144 SustainPine v3.0 177
AutoFact: histone-like protein [Fritillaria liliacea] 1.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 4.40568e-42
Putative N-terminus
sp_v3.0_unigene55246 SustainPine v3.0 334
AutoFact: PREDICTED: histone cluster 1, H2bl-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBC017 9.94922e-44
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative N-terminus
sp_v3.0_unigene55916 SustainPine v3.0 370
AutoFact: Histone H2A (Fragment) n=1 Tax=Arabidopsis thaliana RepID=Q43286_ARATH 7.0e-21
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
N-terminus
sp_v3.0_unigene56231 SustainPine v3.0 412
AutoFact: Histone H2B n=2 Tax=Chlamydomonas reinhardtii RepID=A8IW75_CHLRE 3.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 3.581e-31
Putative Complete
sp_v3.0_unigene56436 SustainPine v3.0 273
AutoFact: Histone H4 (ISS) [Ostreococcus tauri] emb|CAL50535.1| Histone H4 (ISS) [Ostreococcus tauri] 1.0e-22
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 1.194e-11
Putative Complete
sp_v3.0_unigene56642 SustainPine v3.0 209
AutoFact: PREDICTED: histone H3.3B-like n=1 Tax=Rattus norvegicus RepID=UPI00002519F5 5.0e-13
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 7.897e-15
Internal
sp_v3.0_unigene57133 SustainPine v3.0 361
AutoFact: histone H4 [Hyacinthus orientalis] 5.0e-33
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 0.0
Putative Complete
sp_v3.0_unigene57259 SustainPine v3.0 212
AutoFact: Nucleosome assembly protein 1-like protein 4 n=1 Tax=Nicotiana tabacum RepID=Q70Z16_TOBAC 1.0e-11
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Nucleosome assembly protein 1-like protein 1 1.426e-09
Internal
sp_v3.0_unigene57663 SustainPine v3.0 478
AutoFact: histone H4 [Hyacinthus orientalis] 1.0e-34
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene57912 SustainPine v3.0 281
AutoFact: histone H3 [Arabidopsis thaliana] gb|AEE87156.1| histone H3 [Arabidopsis thaliana] 3.0e-20
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
N-terminus
sp_v3.0_unigene57979 SustainPine v3.0 450
AutoFact: Histone H2A n=8 Tax=Picea sitchensis RepID=A9P2B3_PICSI 3.0e-20
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
C-terminus
sp_v3.0_unigene58256 SustainPine v3.0 385
AutoFact: Histone H3 n=3 Tax=Eukaryota RepID=B6SJQ5_MAIZE 4.0e-39
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 6.84e-23
Putative N-terminus
sp_v3.0_unigene58477 SustainPine v3.0 238
AutoFact: Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA 2.0e-14
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 5.188e-37
N-terminus
sp_v3.0_unigene58564 SustainPine v3.0 171
AutoFact: histone H4 [Hyacinthus orientalis] 1.0e-17
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 2.765e-09
Putative C-terminus
sp_v3.0_unigene60460 SustainPine v3.0 317
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 5.0e-25
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 6.715e-19
N-terminus
sp_v3.0_unigene60587 SustainPine v3.0 273
AutoFact: Histone H3 n=1 Tax=Taeniopygia guttata RepID=B5G4P8_TAEGU 5.0e-22
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain