Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1277 SustainPine v3.0 1690
AutoFact: putative tryptophanyl-tRNA synthetase [Oryza sativa Japonica Group] gb|EAY75781.1| hypothetical protein OsI_03697 [Oryza sativa Indica Group] gb|EAZ13498.1| hypothetical protein OsJ_03415 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Complete
sp_v3.0_unigene1283 SustainPine v3.0 3015
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TA90_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase 2.436e-26
Complete
sp_v3.0_unigene1285 SustainPine v3.0 3379
AutoFact: DCD (Development and Cell Death) domain protein n=1 Tax=Arabidopsis thaliana RepID=O82177_ARATH 2.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1292 SustainPine v3.0 3810
AutoFact: protein chromatin remodeling 24 [Arabidopsis thaliana] gb|AAL58917.1|AF462829_1 AT5g63950/MBM17_5 [Arabidopsis thaliana] gb|AAM98274.1| At5g63950/MBM17_5 [Arabidopsis thaliana] gb|AED97819.1| protein chromatin remodeling 24 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 family DNA-dependent ATPase 9.271e-07
Complete
sp_v3.0_unigene1301 SustainPine v3.0 1891
AutoFact: syntaxin-related protein Nt-syr1 [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 2.053e-21
Putative Complete
sp_v3.0_unigene1334 SustainPine v3.0 2312
AutoFact: Remorin family protein [Arabidopsis thaliana] ref|NP_001077869.1| Remorin family protein [Arabidopsis thaliana] gb|AAK60323.1|AF385733_1 At2g02170/F5O4.6 [Arabidopsis thaliana] gb|AAC97217.1| expressed protein [Arabidopsis thaliana] gb|AAO23587.1| At2g021 3.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1346 SustainPine v3.0 2998
AutoFact: putative protein kinase [Arabidopsis thaliana] gb|AAC04483.1| putative protein kinase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Kinase, putative 1.402e-25
Complete
sp_v3.0_unigene1397 SustainPine v3.0 1096
AutoFact: Nonsense-mediated mRNA decay protein, putative n=2 Tax=Malpighiales RepID=B9SS25_RICCO 0.0
FL-Next: sp=Regulator of nonsense transcripts 1 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene1408 SustainPine v3.0 1758
AutoFact: flap endonuclease-1 [Arabidopsis thaliana] gb|AED93576.1| flap endonuclease-1 [Arabidopsis thaliana] 0.0
FL-Next: sp=Flap endonuclease 1-A; Physcomitrella patens subsp. patens (Moss). 0.0
Putative Complete
sp_v3.0_unigene1410 SustainPine v3.0 2138
AutoFact: DNA polymerase epsilon subunit B -like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: DNA polymerase epsilon subunit B-like protein 2.207e-13
Complete
sp_v3.0_unigene1414 SustainPine v3.0 2039
AutoFact: Piwi multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Argonaute protein group 6.25e-19
Complete
sp_v3.0_unigene1419 SustainPine v3.0 4284
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1424 SustainPine v3.0 913
AutoFact: SWR1 complex protein, SNF2 family DNA-dependent ATPase (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S832_PHYPA 5.0e-19
FL-Next: tr=Chromatin remodeling complex subunit; subsp. trichocarpa). 0.0
Sma3: SWR1 complex protein, SNF2 family DNA-dependent ATPase 3.006e-09
Internal
sp_v3.0_unigene1431 SustainPine v3.0 7160
AutoFact: gag-pol polyprotein [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative gag-pol polyprotein 2.535e-09
Complete
sp_v3.0_unigene1434 SustainPine v3.0 4023
AutoFact: B3 multi-domain protein 6.0e-16
FL-Next: sp=B3 domain-containing protein Os07g0679700; Oryza sativa subsp. japonica (Rice). 0.0
Complete
sp_v3.0_unigene1437 SustainPine v3.0 2249
AutoFact: S-adenosylmethionine-dependent methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RWD4_RICCO 0.0
FL-Next: tr=S-adenosylmethionine-dependent methyltransferase, putative; Ricinus communis (Castor bean). 0.0
Sma3: Putative uncharacterized protein At2g31740 3.441e-09
C-terminus
sp_v3.0_unigene1449 SustainPine v3.0 1927
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RWJ4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WD-repeat protein, putative 2.346e-14
Putative Complete
sp_v3.0_unigene1477 SustainPine v3.0 2031
AutoFact: DUF707 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Lysine ketoglutarate reductase trans-splicing related 1 7.275e-19
Complete
sp_v3.0_unigene1486 SustainPine v3.0 1317
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 1.0e-35
FL-Next: tr=Putative histone H1; Pinus pinaster (Maritime pine). 0.0
Sma3: Putative histone H1 0.0
Complete
sp_v3.0_unigene1497 SustainPine v3.0 1437
AutoFact: DNA-directed RNA polymerase IIa [Nicotiana tabacum] gb|AAD34614.1|AF153278_1 DNA-directed RNA polymerase IIb [Nicotiana tabacum] 8.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain