Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene209563 SustainPine v3.0 577
AutoFact: Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH 9.00054e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene209573 SustainPine v3.0 655
AutoFact: Histone domain containing protein 2.0e-14
Sma3: Histone H2A 0.0
coding
sp_v3.0_unigene209601 SustainPine v3.0 980
AutoFact: [R] COG2118 DNA-binding protein 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene209629 SustainPine v3.0 789
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RBQ7_RICCO 0.0
FL-Next: tr=DNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene209687 SustainPine v3.0 588
AutoFact: Mini zinc finger 1 n=1 Tax=Welwitschia mirabilis RepID=B0LK08_WELMI 3.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ZF-HD homeobox protein 4.7e-16
Putative Complete
sp_v3.0_unigene209756 SustainPine v3.0 194
AutoFact: Histone H2A n=8 Tax=Picea sitchensis RepID=A9P2B3_PICSI 6.0e-11
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative N-terminus
sp_v3.0_unigene209800 SustainPine v3.0 277
AutoFact: Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: HAT family dimerisation domain containing protein 4.5e-08
Internal
sp_v3.0_unigene209812 SustainPine v3.0 321
AutoFact: histone H4 [Hyacinthus orientalis] 8.0e-28
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 0.0
Putative Complete
sp_v3.0_unigene209849 SustainPine v3.0 677
AutoFact: basic helix-loop-helix domain-containing protein [Arabidopsis thaliana] ref|XP_002893369.1| hypothetical protein ARALYDRAFT_472704 [Arabidopsis lyrata subsp. lyrata] dbj|BAC43682.1| unknown protein [Arabidopsis thaliana] gb|AAO42932.1| At1g26948 [Arabidop 7.0e-24
FL-Next: sp=Transcription factor bHLH135; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Transcription regulator, putative 9.213e-11
Complete
sp_v3.0_unigene210049 SustainPine v3.0 218
AutoFact: cytochrome P450 [Pyrus communis] 4.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cytochrome P450-dependent monooxygenase 2.304e-13
Internal
sp_v3.0_unigene210063 SustainPine v3.0 173
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Cycas revoluta RepID=Q56GG4_CYCRE 7.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 6.091e-29
C-terminus
sp_v3.0_unigene210071 SustainPine v3.0 680
AutoFact: Transcription factor (Fragment) n=1 Tax=Lycoris longituba RepID=D6MKG2_9ASPA 3.0e-39
FL-Next: Isoform 2 of Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 0.0
N-terminus
sp_v3.0_unigene210084 SustainPine v3.0 279
AutoFact: Unassigned protein
FL-Next: sp=Acyltransferase-like protein At1g54570, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Gb|AAC64874.1 2.976e-13
Internal
sp_v3.0_unigene210135 SustainPine v3.0 388
AutoFact: MYB transcription factor MYB92 [Glycine max] 1.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: MYB1 5.923e-11
Putative N-terminus
sp_v3.0_unigene210151 SustainPine v3.0 897
AutoFact: R2R3-MYB transcription factor n=1 Tax=Pinus taeda RepID=Q6V0J3_PINTA 0.0
FL-Next: tr=R2R3-MYB transcription factor; Pinus taeda (Loblolly pine). 0.0
Sma3: R2R3-MYB transcription factor 0.0
N-terminus
sp_v3.0_unigene210161 SustainPine v3.0 284
AutoFact: Unassigned protein
FL-Next: sp=Trihelix transcription factor GTL1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene210162 SustainPine v3.0 857
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RZ10_RICCO 7.0e-20
FL-Next: tr=ATP binding protein, putative; Ricinus communis (Castor bean). 0.0
Putative N-terminus
sp_v3.0_unigene210187 SustainPine v3.0 396
AutoFact: Cationic amino acid transporter n=2 Tax=Populus RepID=B9GYF7_POPTR 1.0e-38
FL-Next: sp=Cationic amino acid transporter 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Cationic amino acid transporter 2.138e-28
Internal
sp_v3.0_unigene210213 SustainPine v3.0 708
AutoFact: aspartyl protease-like protein [Arabidopsis thaliana] gb|AAG50814.1|AC079281_16 hypothetical protein [Arabidopsis thaliana] gb|AAM20575.1| unknown protein [Arabidopsis thaliana] gb|AAN15613.1| unknown protein [Arabidopsis thaliana] dbj|BAF00436.1| hypothe 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Aspartic proteinase nepenthesin-1, putative 8.89e-12
C-terminus
sp_v3.0_unigene210246 SustainPine v3.0 535
AutoFact: Putative auxin response factor 2/1/9 (Fragment) n=1 Tax=Cycas rumphii RepID=E1UHY0_CYCRU 0.0
FL-Next: tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine). 0.0
Sma3: Auxin response factor, putative 3.614e-25
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain