Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene208919 SustainPine v3.0 525
• AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 2.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene208937 SustainPine v3.0 705
• AutoFact: DNA-binding protein MNB1B, putative n=1 Tax=Ricinus communis RepID=B9S139_RICCO 3.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene208955 SustainPine v3.0 594
• AutoFact: Histone H4 n=1 Tax=Ostreococcus tauri RepID=Q01FF9_OSTTA 4.0e-22
• FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Histone H4 1.127e-11
Complete
sp_v3.0_unigene208979 SustainPine v3.0 333
• AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 8.0e-30
• FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
• Sma3: Cytochrome c 4.835e-39
Putative C-terminus
sp_v3.0_unigene209003 SustainPine v3.0 309
• AutoFact: Histone domain containing protein 6.0e-16
• FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2A 0.0
N-terminus
sp_v3.0_unigene209049 SustainPine v3.0 515
• AutoFact: vacuolar ATP synthase [Oryza sativa Indica Group] 2.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Leucine-rich repeat protein 6.474e-18
C-terminus
sp_v3.0_unigene209075 SustainPine v3.0 322
• AutoFact: Histone H2A n=1 Tax=Picea sitchensis RepID=A9NTX3_PICSI 1.0e-15
• FL-Next: sp=Histone H2A; Pinus taeda (Loblolly pine). 0.0
• Sma3: Histone H2A 0.0
N-terminus
sp_v3.0_unigene209113 SustainPine v3.0 346
• AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 5.00264e-43
• FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H3 4.247e-29
N-terminus
sp_v3.0_unigene209168 SustainPine v3.0 760
• AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 9.99967e-42
• FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
• Sma3: Putative histone H4 0.0
Complete
sp_v3.0_unigene209187 SustainPine v3.0 1235
• AutoFact: RecName: Full=Aspartic proteinase nepenthesin-1; AltName: Full=Nepenthesin-I; Flags: Precursor dbj|BAD07474.1| aspartic proteinase nepenthesin I [Nepenthes gracilis] 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Aspartic proteinase nepenthesin-1, putative 2.331e-09
C-terminus
sp_v3.0_unigene209195 SustainPine v3.0 844
• AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 7.0e-33
• FL-Next: tr=Putative histone H1; Pinus pinaster (Maritime pine). 0.0
• Sma3: Putative histone H1 0.0
C-terminus
sp_v3.0_unigene209200 SustainPine v3.0 649
• AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 0.0
• FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
• Sma3: Histone H2B 6.485e-33
C-terminus
sp_v3.0_unigene209306 SustainPine v3.0 473
• AutoFact: Trypan_PARP multi-domain protein 4.0e-17
• Sma3: Putative glycine rich protein 5.722e-25
coding
sp_v3.0_unigene209331 SustainPine v3.0 530
• AutoFact: ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana] sp|Q9SVD7.1|UEV1D_ARATH RecName: Full=Ubiquitin-conjugating enzyme E2 variant 1D; Short=Ubc enzyme variant 1D; AltName: Full=Protein MMS ZWEI HOMOLOG 4 emb|CAB43411.1| putative DNA-binding 8.00001e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin-conjugating enzyme, putative 1.262e-08
Complete
sp_v3.0_unigene209392 SustainPine v3.0 327
• AutoFact: DNA-directed RNA Polymerase II subunit K [Arabidopsis thaliana] dbj|BAB09703.1| unnamed protein product [Arabidopsis thaliana] gb|AAK76628.1| unknown protein [Arabidopsis thaliana] gb|AAL85038.1| unknown protein [Arabidopsis thaliana] gb|AAM67289.1| DNA d 6.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide 5.58e-09
Complete
sp_v3.0_unigene209402 SustainPine v3.0 222
• AutoFact: Gag-Pol [Ipomoea batatas] 4.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene209463 SustainPine v3.0 385
• AutoFact: Pollen major allergen No.121 isoform 2 n=1 Tax=Cryptomeria japonica RepID=Q588B9_CRYJA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Xyloglucan endotransglycosylase 1.08601e-42
N-terminus
sp_v3.0_unigene209486 SustainPine v3.0 420
• AutoFact: DNA methyltransferase PMT1-like protein [Arabidopsis thaliana] 9.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA methyltransferase 1.923e-11
C-terminus
sp_v3.0_unigene209536 SustainPine v3.0 434
• AutoFact: Calcium binding protein with EF-hand motif (Fragment) n=4 Tax=Pseudotsuga RepID=C6F9S2_PSEMZ 6.0e-26
• FL-Next: sp=Calcium-binding protein KIC; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Ccd1, putative 1.008e-15
Complete
sp_v3.0_unigene209554 SustainPine v3.0 723
• AutoFact: Histone H4 n=1 Tax=Camellia sinensis RepID=F4YF87_CAMSI 4.0e-38
• FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H4 1.194e-11
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain