Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene207597 SustainPine v3.0 428
• AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 3.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.671e-23
Internal
sp_v3.0_unigene207598 SustainPine v3.0 398
• AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 4.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.707e-11
Internal
sp_v3.0_unigene207665 SustainPine v3.0 489
• AutoFact: Calcium binding protein with EF-hand motif (Fragment) n=4 Tax=Pseudotsuga RepID=C6F9S2_PSEMZ 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ccd1, putative 1.822e-15
Complete
sp_v3.0_unigene207687 SustainPine v3.0 1196
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_83.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SMH3_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP binding protein, putative 1.831e-11
C-terminus
sp_v3.0_unigene207711 SustainPine v3.0 793
• AutoFact: Histone H1-like protein (Fragment) n=15 Tax=Picea sitchensis RepID=E0ZG68_PICSI 6.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H1 0.0
Putative Complete
sp_v3.0_unigene207719 SustainPine v3.0 724
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TX75_VITVI 4.0e-23
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus
sp_v3.0_unigene207722 SustainPine v3.0 709
• AutoFact: Histone H2A n=1 Tax=Populus trichocarpa RepID=B9I7E7_POPTR 8.0e-25
• FL-Next: sp=Histone H2A; Pinus taeda (Loblolly pine). 0.0
• Sma3: Histone H2A 0.0
Putative Complete
sp_v3.0_unigene207725 SustainPine v3.0 705
• AutoFact: TBP-associated factor 8 [Arabidopsis thaliana] gb|AAK25888.1|AF360178_1 unknown protein [Arabidopsis thaliana] emb|CAB36711.1| hypothetical protein [Arabidopsis thaliana] emb|CAB80151.1| hypothetical protein [Arabidopsis thaliana] gb|AAK64071.1| unknown p 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene207731 SustainPine v3.0 689
• AutoFact: Histone H2A.6 n=6 Tax=Spermatophyta RepID=H2A6_ARATH 2.0e-25
• FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2A 0.0
Putative Complete
sp_v3.0_unigene207732 SustainPine v3.0 685
• AutoFact: Histone H3 n=1 Tax=Caenorhabditis remanei RepID=E3M3Z3_CAERE 0.0
• FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene207736 SustainPine v3.0 666
• AutoFact: R2R3-MYB transcription factor MYB20 (Fragment) n=1 Tax=Picea glauca RepID=C0JTD4_PICGL 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MYB transcription factor 3.134e-24
Putative Complete
sp_v3.0_unigene207756 SustainPine v3.0 600
• AutoFact: bHLH transcription factor [Brassica napus] 3.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene207764 SustainPine v3.0 592
• AutoFact: similar to FLAP endonuclease-1 (SW:P39748) [Arabidopsis thaliana] 2.0e-21
• FL-Next: sp=Flap endonuclease 1-B; Physcomitrella patens subsp. patens (Moss). 0.0
• Sma3: Flap endonuclease 1a 4.233e-09
Internal
sp_v3.0_unigene207769 SustainPine v3.0 581
• AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 1.0e-13
• FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Cold shock domain protein 3 2.275e-08
C-terminus
sp_v3.0_unigene207810 SustainPine v3.0 498
• AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RWJ4_RICCO 3.0e-36
• FL-Next: sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: WD-repeat protein, putative 7.894e-10
Internal
sp_v3.0_unigene207863 SustainPine v3.0 438
• AutoFact: zinc transporter, putative [Asparagus officinalis] 9.94922e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative zinc transporter 7.889e-17
Internal
sp_v3.0_unigene207873 SustainPine v3.0 429
• AutoFact: Histone H4 n=1 Tax=Ostreococcus tauri RepID=Q01FF9_OSTTA 9.0e-26
• FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Histone H4 1.194e-11
Complete
sp_v3.0_unigene207892 SustainPine v3.0 397
• AutoFact: Histone H2A n=8 Tax=Picea sitchensis RepID=A9P2B3_PICSI 3.0e-15
• FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene207952 SustainPine v3.0 324
• AutoFact: Myb transcription factor n=1 Tax=Solenostemon scutellarioides RepID=A5A381_SOLSC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Myb protein 2.916e-09
Putative N-terminus
sp_v3.0_unigene208062 SustainPine v3.0 210
• AutoFact: Histone H2A n=8 Tax=Picea sitchensis RepID=A9P2B3_PICSI 9.0e-07
• FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2A 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain