Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene206587 SustainPine v3.0 963
• AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.132e-14
N-terminus
sp_v3.0_unigene206641 SustainPine v3.0 261
• AutoFact: Copia-like retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9ZQE4_ARATH 9.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gag-Pol polyprotein 2.641e-07
Internal
sp_v3.0_unigene206645 SustainPine v3.0 147
• AutoFact: Unassigned protein
• FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Internal
sp_v3.0_unigene206650 SustainPine v3.0 432
• AutoFact: chaperone DNA J2 [Zea mays] gb|AAC08009.1| DnaJ-related protein ZMDJ1 [Zea mays] gb|ACF78499.1| unknown [Zea mays] gb|ACG32917.1| dnaJ protein [Zea mays] gb|ACL53813.1| unknown [Zea mays] gb|ACN34490.1| unknown [Zea mays] gb|ACR38444.1| unknown [Zea mays] 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DnaJ protein 3.583e-14
C-terminus
sp_v3.0_unigene206664 SustainPine v3.0 362
• AutoFact: DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative [Musa balbisiana] 6.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene206688 SustainPine v3.0 352
• AutoFact: Polyprotein n=1 Tax=Drosophila melanogaster RepID=B6V6Z8_DROME 3.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative retroelement pol polyprotein 9.586e-08
Internal
sp_v3.0_unigene206700 SustainPine v3.0 818
• AutoFact: Gly_rich multi-domain protein 7.0e-19
• Sma3: Transposon protein, putative, CACTA, En/Spm sub-class, expressed 1.183e-17
coding
sp_v3.0_unigene206719 SustainPine v3.0 406
• AutoFact: Calcium binding protein with EF-hand motif (Fragment) n=4 Tax=Pseudotsuga RepID=C6F9S2_PSEMZ 4.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ccd1, putative 2.393e-15
N-terminus
sp_v3.0_unigene206766 SustainPine v3.0 631
• AutoFact: Unassigned protein
• FL-Next: tr=Centromere protein S; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
• Sma3: Os04g0397700 protein 9.747e-06
Putative Complete
sp_v3.0_unigene206803 SustainPine v3.0 611
• AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 8.00001e-42
• FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
• Sma3: Putative histone H4 0.0
Complete
sp_v3.0_unigene206833 SustainPine v3.0 365
• AutoFact: MAR-binding protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GBR1_CUCME 6.0e-22
• FL-Next: sp=Probable nucleolar protein 5-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene206845 SustainPine v3.0 631
• AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 9.705e-11
Putative C-terminus
sp_v3.0_unigene206852 SustainPine v3.0 942
• AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 7.00005e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2B 5.615e-36
Putative Complete
sp_v3.0_unigene206892 SustainPine v3.0 547
• AutoFact: DNA-directed RNA Polymerase II subunit K [Arabidopsis thaliana] dbj|BAB09703.1| unnamed protein product [Arabidopsis thaliana] gb|AAK76628.1| unknown protein [Arabidopsis thaliana] gb|AAL85038.1| unknown protein [Arabidopsis thaliana] gb|AAM67289.1| DNA d 2.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide 6.913e-09
Complete
sp_v3.0_unigene206907 SustainPine v3.0 267
• AutoFact: ribosomal S29 subunit [Arabidopsis thaliana] dbj|BAD43582.1| ribosomal S29 subunit [Arabidopsis thaliana] dbj|BAD43833.1| ribosomal S29 subunit [Arabidopsis thaliana] 9.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S29 1.74e-23
Putative Complete
sp_v3.0_unigene207021 SustainPine v3.0 544
• AutoFact: 40S ribosomal protein S23 n=32 Tax=leotiomyceta RepID=RS23_ASPFU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 1.975e-10
Complete
sp_v3.0_unigene207063 SustainPine v3.0 765
• AutoFact: putative cytochrome P450 [Populus tremula x Populus alba] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Flavonoid 3'-hydroxylase 1.587e-28
C-terminus
sp_v3.0_unigene207119 SustainPine v3.0 901
• AutoFact: rve domain containing protein 2.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 8.155e-12
Internal
sp_v3.0_unigene207127 SustainPine v3.0 736
• AutoFact: DUF659 domain containing protein 7.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene207170 SustainPine v3.0 533
• AutoFact: rve domain containing protein 5.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain