Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene6666 SustainPine v3.0 3232
• AutoFact: ISWI chromatin remodeling complex ATPase ISW1, putative n=1 Tax=Ricinus communis RepID=B9S6I7_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: SNF2 super family 1.796e-12
Complete
sp_v3.0_unigene6684 SustainPine v3.0 1939
• AutoFact: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9RQR6_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Calmodulin binding protein 1.378e-18
C-terminus
sp_v3.0_unigene6704 SustainPine v3.0 2494
• AutoFact: DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] sp|Q9SQV1.1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana] gb|AEE74400.1| DEAD-box ATP-dependent RNA heli 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.075e-24
C-terminus
sp_v3.0_unigene6743 SustainPine v3.0 1735
• AutoFact: transcription factor bHLH30 [Arabidopsis thaliana] sp|Q9S7Y1.1|BH030_ARATH RecName: Full=Transcription factor bHLH30; AltName: Full=Basic helix-loop-helix protein 30; Short=AtbHLH30; Short=bHLH 30; AltName: Full=Transcription factor EN 53; AltName: Full=b 3.99931e-42
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: DNA binding protein, putative 4.441e-06
Complete
sp_v3.0_unigene6757 SustainPine v3.0 3008
• AutoFact: putative replication licensing factor MCM4 [Oryza sativa Japonica Group] 0.0
• FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene6762 SustainPine v3.0 2672
• AutoFact: pre-mRNA-splicing factor 38B [Arabidopsis thaliana] gb|AAM13215.1| unknown protein [Arabidopsis thaliana] gb|AAP68295.1| At5g37370 [Arabidopsis thaliana] gb|AED94173.1| pre-mRNA-splicing factor 38B [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6764 SustainPine v3.0 1766
• AutoFact: cysteine proteinase-like protein [Arabidopsis thaliana] gb|AAF14829.1|AC011664_11 unknown protein [Arabidopsis thaliana] gb|AAS76700.1| At3g02070 [Arabidopsis thaliana] gb|AAS92324.1| At3g02070 [Arabidopsis thaliana] dbj|BAH20151.1| AT3G02070 [Arabidopsis 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cysteine-type peptidase, putative 3.802e-15
Complete
sp_v3.0_unigene6770 SustainPine v3.0 2299
• AutoFact: ATG11 domain containing protein 4.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome chr11 scaffold_14, whole genome shotgun sequence 5.658e-06
Complete
sp_v3.0_unigene6815 SustainPine v3.0 3561
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S9Q9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6836 SustainPine v3.0 1456
• AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SHH4_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription factor, putative 3.457e-12
C-terminus
sp_v3.0_unigene6864 SustainPine v3.0 1179
• AutoFact: Zinc finger CCCH domain-containing protein 20 n=2 Tax=Arabidopsis RepID=C3H20_ARATH 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Zn-finger transcription factor 4.501e-15
Internal
sp_v3.0_unigene6870 SustainPine v3.0 1068
• AutoFact: Putative DNA-binding protein n=2 Tax=Arabidopsis thaliana RepID=O81047_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-binding protein smubp-2, putative 5.596e-09
C-terminus
sp_v3.0_unigene6878 SustainPine v3.0 2021
• AutoFact: glycerol-3-phosphate acyltransferase [Arabidopsis thaliana] sp|Q9LMM0.1|GPAT4_ARATH RecName: Full=Glycerol-3-phosphate acyltransferase 4; Short=AtGPAT4 gb|AAF81319.1|AC061957_15 Contains similarity to a hypothetical protein F16M14.4 gi|7485589 from Arabid 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ER glycerol-phosphate acyltransferase 5.565e-22
Complete
sp_v3.0_unigene6886 SustainPine v3.0 2437
• AutoFact: Putative BEL1-like protein (Fragment) n=1 Tax=Gnetum gnemon RepID=Q7XA57_GNEGN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Bel1 homeotic protein, putative 1.036e-25
Putative Complete
sp_v3.0_unigene6890 SustainPine v3.0 1026
• AutoFact: Endoribonuclease Dicer homolog 1 n=4 Tax=Poaceae RepID=DCL1_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 7.19e-13
Putative Complete
sp_v3.0_unigene6901 SustainPine v3.0 3756
• AutoFact: auxin response factor 2 [Arabidopsis thaliana] ref|NP_201006.2| auxin response factor 2 [Arabidopsis thaliana] ref|NP_974980.1| auxin response factor 2 [Arabidopsis thaliana] sp|Q94JM3.2|ARFB_ARATH RecName: Full=Auxin response factor 2; AltName: Full=ARF1 0.0
• FL-Next: tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine). 0.0
• Sma3: Auxin response factor, putative 8.507e-28
Complete
sp_v3.0_unigene6914 SustainPine v3.0 1039
• AutoFact: Dof transcription factor n=1 Tax=Pinus pinaster RepID=B0BCH1_PINPS 0.0
• FL-Next: tr=Dof transcription factor; Pinus pinaster (Maritime pine). 0.0
• Sma3: F-box family protein 0.0
N-terminus
sp_v3.0_unigene6915 SustainPine v3.0 1527
• AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RZ10_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6959 SustainPine v3.0 3341
• AutoFact: protein kinase-like protein [Arabidopsis thaliana] gb|AAF87863.1|AC022520_7 similar to cdc2 protein kinase [Arabidopsis thaliana] gb|AEE32884.1| protein kinase-like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: CDKC 1.332e-15
Complete
sp_v3.0_unigene6962 SustainPine v3.0 1309
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GT-2 factor 5.785e-08
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain