Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene5832 SustainPine v3.0 1133
AutoFact: transcription initiation factor TFIID subunit D7 [Arabidopsis thaliana] gb|AAD25788.1|AC006577_24 Similar to gb|U21858 transcription initiation factor TFIID 31KD subunit (TAFII32) from Homo sapiens [Arabidopsis thaliana] gb|AAF65406.1|AF238327_1 putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene5836 SustainPine v3.0 2287
AutoFact: MYB transcription factor-like [Oryza sativa Japonica Group] dbj|BAD17383.1| MYB transcription factor-like [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene5852 SustainPine v3.0 1521
AutoFact: DUF482 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_77, whole genome shotgun sequence 2.279e-06
C-terminus
sp_v3.0_unigene5859 SustainPine v3.0 2462
AutoFact: [RTKL] COG0515 Serine/threonine protein kinase 0.0
FL-Next: Isoform 1S of Mitogen-activated protein kinase kinase kinase ANP1 OS=Arabidopsis thaliana GN=ANP1 0.0
Sma3: Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative 3.345e-13
Complete
sp_v3.0_unigene5878 SustainPine v3.0 3504
AutoFact: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTL0_RICCO 0.0
FL-Next: sp=Protein IQ-DOMAIN 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Calmodulin binding protein, putative 7.297e-06
Complete
sp_v3.0_unigene5923 SustainPine v3.0 2173
AutoFact: Zinc finger-homeodomain protein 2 n=1 Tax=Saruma henryi RepID=B0LK13_SARHE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Zinc finger-homeodomain protein 1 1.799e-20
Complete
sp_v3.0_unigene5932 SustainPine v3.0 1823
AutoFact: Predicted protein n=2 Tax=Physcomitrella patens RepID=A9TKM8_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Squamosa promoter-binding protein, putative 6.291e-23
Complete
sp_v3.0_unigene5961 SustainPine v3.0 1384
AutoFact: Putative ammonium transporter AMT2 n=3 Tax=Cupressaceae RepID=Q0EEW6_CRYJA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ammonium transporter 3.08286e-44
C-terminus
sp_v3.0_unigene5992 SustainPine v3.0 2190
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-binding protein 1.053e-09
Complete
sp_v3.0_unigene5998 SustainPine v3.0 2216
AutoFact: trihelix DNA binding transcription factor [Arabidopsis thaliana] emb|CAB82933.1| GT2-like protein [Arabidopsis thaliana] gb|AED90641.1| trihelix DNA binding transcription factor [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GT-2 factor 5.706e-12
C-terminus
sp_v3.0_unigene6056 SustainPine v3.0 2692
AutoFact: two-component response regulator-like APRR2 [Arabidopsis thaliana] ref|NP_849403.1| two-component response regulator-like APRR2 [Arabidopsis thaliana] ref|NP_849404.2| two-component response regulator-like APRR2 [Arabidopsis thaliana] ref|NP_001190759.1| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6057 SustainPine v3.0 2091
AutoFact: Helix-loop-helix DNA-binding [Medicago truncatula] 5.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Helix-loop-helix DNA-binding domain containing protein, expressed 5.729e-08
Complete
sp_v3.0_unigene6076 SustainPine v3.0 1972
AutoFact: R2R3-Myb4 transcription factor (Fragment) n=1 Tax=Pinus pinaster RepID=B1PPT6_PINPS 0.0
FL-Next: tr=R2R3-MYB transcription factor MYB4; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: R2R3-Myb4 transcription factor 0.0
Putative Complete
sp_v3.0_unigene6088 SustainPine v3.0 1435
AutoFact: pfam00294, PfkB, pfkB family carbohydrate kinase 8.0e-09
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Putative Complete
sp_v3.0_unigene6096 SustainPine v3.0 2524
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SV05_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone-lysine N-methyltransferase 7.315e-09
Complete
sp_v3.0_unigene6132 SustainPine v3.0 2714
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Os08g0500500 protein 7.31e-06
C-terminus
sp_v3.0_unigene6139 SustainPine v3.0 2209
AutoFact: Probable L-type lectin-domain containing receptor kinase S.5 n=2 Tax=Arabidopsis RepID=LRKS5_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Kinase, putative 2.041e-33
C-terminus
sp_v3.0_unigene6162 SustainPine v3.0 2459
AutoFact: Protein arginine n-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RT51_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein arginine N-methyltransferase 1.082e-10
Complete
sp_v3.0_unigene6167 SustainPine v3.0 1637
AutoFact: Xyloglucan endotransglucosylase/hydrolase 2 n=1 Tax=Rosa x borboniana RepID=Q2MK81_9ROSA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Xyloglucan endotransglycosylase 1.19797e-41
Complete
sp_v3.0_unigene6177 SustainPine v3.0 2835
AutoFact: DNA-binding protein-like [Arabidopsis thaliana] 0.0
FL-Next: sp=E3 ubiquitin-protein ligase COP1; Pisum sativum (Garden pea). 0.0
Sma3: Retinoblastoma-binding protein, putative 1.715e-12
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain