Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene4819 SustainPine v3.0 798
AutoFact: Histone H4 n=1 Tax=Ostreococcus tauri RepID=Q01FF9_OSTTA 5.0e-36
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 1.194e-11
Complete
sp_v3.0_unigene4872 SustainPine v3.0 752
AutoFact: Histone H2B n=2 Tax=Picea sitchensis RepID=A9NZJ5_PICSI 5.99756e-43
FL-Next: sp=Histone H2B; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 1.331e-35
C-terminus
sp_v3.0_unigene4876 SustainPine v3.0 629
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATAF1-like protein 6.156e-10
C-terminus
sp_v3.0_unigene4888 SustainPine v3.0 180
AutoFact: Unassigned protein
FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 9.077e-09
Internal
sp_v3.0_unigene4941 SustainPine v3.0 648
AutoFact: cytochrome P450 [Pyrus communis] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cytochrome P450, putative 5.694e-24
C-terminus
sp_v3.0_unigene4972 SustainPine v3.0 744
AutoFact: Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative n=1 Tax=Ricinus communis RepID=B9RTY0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative 7.883e-13
Internal
sp_v3.0_unigene4974 SustainPine v3.0 2436
AutoFact: kinesin-related protein [Gossypium hirsutum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Kinesin-like protein 5.996e-20
C-terminus
sp_v3.0_unigene4982 SustainPine v3.0 307
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S7A8_RICCO 1.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleic acid binding protein, putative 1.486e-20
Internal
sp_v3.0_unigene4984 SustainPine v3.0 192
AutoFact: transcription factor DcMYB5 [Daucus carota] 5.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene4998 SustainPine v3.0 801
AutoFact: cytochrome P450 [Panax ginseng] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Flavonoid 3',5'-hydroxylase 2.74e-35
C-terminus
sp_v3.0_unigene5040 SustainPine v3.0 912
AutoFact: DNA-binding transcription factor blind 1 n=1 Tax=Gossypium hirsutum RepID=E7D5Q3_GOSHI 5.60519e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: MYB transcription factor 1.382e-24
Internal
sp_v3.0_unigene5045 SustainPine v3.0 3143
AutoFact: NAC domain containing protein 28 [Arabidopsis thaliana] gb|AAF06052.1|AC009513_8 Contains similarity to gb|AF123310 NAC domain protein NAM gene from Arabidopsis thaliana gb|AEE34440.1| NAC domain containing protein 28 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NAC domain protein, IPR003441 0.0
Putative Complete
sp_v3.0_unigene5072 SustainPine v3.0 749
AutoFact: R2R3-MYB transcription factor MYB16 (Fragment) n=2 Tax=Picea RepID=C0JTD5_PICGL 7.0e-21
FL-Next: tr=R2R3-MYB transcription factor MYB5; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: R2R3-Myb14 transcription factor 2.9e-09
C-terminus
sp_v3.0_unigene5242 SustainPine v3.0 290
AutoFact: TT_ORF1 multi-domain protein 9.0e-08
putative_coding
sp_v3.0_unigene5245 SustainPine v3.0 2927
AutoFact: high mobility group-box and ARID domain-binding domain-containing protein [Arabidopsis thaliana] sp|Q9MAT6.1|HMG15_ARATH RecName: Full=High mobility group B protein 15; AltName: Full=Nucleosome/chromatin assembly factor group D 15 gb|AAF40449.1|AC004809_7 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: High mobility group family 1.404e-10
Putative Complete
sp_v3.0_unigene5338 SustainPine v3.0 2100
AutoFact: replication protein A1 [Oryza sativa Indica Group] gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Replication protein A1 2.194e-08
Complete
sp_v3.0_unigene5351 SustainPine v3.0 4895
AutoFact: putative type 1 RNA helicase [Oryza sativa Japonica Group] gb|EEE67210.1| hypothetical protein OsJ_24327 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr2 scaffold_11, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene5368 SustainPine v3.0 2201
AutoFact: OTU-like cysteine protease family protein [Arabidopsis thaliana] ref|NP_001119168.1| OTU-like cysteine protease family protein [Arabidopsis thaliana] gb|AAM64524.1| unknown [Arabidopsis thaliana] dbj|BAD95211.1| hypothetical protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cysteine-type peptidase, putative 3.52e-15
Complete
sp_v3.0_unigene5374 SustainPine v3.0 1037
AutoFact: bHLH protein [Arabidopsis thaliana] 3.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Myc-like anthocyanin regulatory protein 2.131e-21
Complete
sp_v3.0_unigene5395 SustainPine v3.0 3095
AutoFact: Ubiquitin carboxyl-terminal hydrolase (Fragment) n=3 Tax=Vitis vinifera RepID=E0CSV0_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase 2.707e-15
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain