Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene4164 SustainPine v3.0 1460
• AutoFact: NAC domain protein, IPR003441 n=1 Tax=Populus trichocarpa RepID=B9IJW7_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NAC domain protein, IPR003441 0.0
Complete
sp_v3.0_unigene4205 SustainPine v3.0 1367
• AutoFact: Xyloglucan endotransglucosylase/hydrolase protein 9, putative n=1 Tax=Ricinus communis RepID=B9S9N2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Xyloglucan endotransglycosylase 3.387e-39
Complete
sp_v3.0_unigene4218 SustainPine v3.0 1782
• AutoFact: Cytochrome P450 750A1 n=1 Tax=Pinus taeda RepID=C75A1_PINTA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Flavonoid 3'-hydroxylase 3.815e-33
Complete
sp_v3.0_unigene4226 SustainPine v3.0 1895
• AutoFact: MYB transcription factor [Triticum aestivum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MYB-CC type transfactor 1.08e-24
Complete
sp_v3.0_unigene4241 SustainPine v3.0 4034
• AutoFact: rve domain containing protein 4.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gag-Pol polyprotein 7.295e-10
Complete
sp_v3.0_unigene4307 SustainPine v3.0 495
• AutoFact: histone H4 [Hyacinthus orientalis] 6.0e-39
• FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene4309 SustainPine v3.0 638
• AutoFact: Unassigned protein 4.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene4326 SustainPine v3.0 822
• AutoFact: transcriptional activator DEMETER [Arabidopsis thaliana] sp|Q8LK56.2|DME_ARATH RecName: Full=Transcriptional activator DEMETER; AltName: Full=DNA glycosylase-related protein DME gb|ABC61677.1| DNA glycosylase DEMETER [Arabidopsis thaliana] gb|AED90761.1| 2.0e-11
• FL-Next: Isoform 1 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
• Sma3: Putative transcriptional activator DEMETER 4.891e-09
Internal
sp_v3.0_unigene4329 SustainPine v3.0 982
• AutoFact: MYB transcription factor MYB185 [Glycine max] 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MYB transcription factor 1.656e-22
N-terminus
sp_v3.0_unigene4346 SustainPine v3.0 574
• AutoFact: NAC domain containing protein 35 [Arabidopsis thaliana] gb|AAC78526.2| NAM (no apical meristem)-like protein [Arabidopsis thaliana] gb|AEC05582.1| NAC domain containing protein 35 [Arabidopsis thaliana] 4.00001e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NAC domain protein, IPR003441 0.0
Putative N-terminus
sp_v3.0_unigene4351 SustainPine v3.0 460
• AutoFact: NAC transcription factor NAM-1 [Hordeum vulgare subsp. vulgare] gb|ABY67949.1| NAM-1 [Hordeum vulgare subsp. vulgare] 2.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NAC domain protein 1.961e-37
N-terminus
sp_v3.0_unigene4360 SustainPine v3.0 268
• AutoFact: RNA polymerase, dimerisation [Medicago truncatula] 5.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase II, third largest subunit 3.741e-09
Internal
sp_v3.0_unigene4385 SustainPine v3.0 814
• AutoFact: rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] gb|AEE28513.1| rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Lyase, putative 2.067e-27
N-terminus
sp_v3.0_unigene4396 SustainPine v3.0 354
• AutoFact: Iron-inhibited ABC transporter (Fragment) n=3 Tax=Pinaceae RepID=C6F6D7_PSEMZ 6.99949e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ABC transporter family protein 9.84e-09
Internal
sp_v3.0_unigene4432 SustainPine v3.0 452
• AutoFact: Transcriptional adapter ADA2 n=9 Tax=Poaceae RepID=TADA2_ORYSJ 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone acetyltransferase complex component 8.499e-20
Internal
sp_v3.0_unigene4433 SustainPine v3.0 1199
• AutoFact: transcription factor GAMYB [Triticum monococcum] 7.0e-34
• FL-Next: tr=R2R3-MYB transcription factor MYB1; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: MYB transcription factor 2.83e-14
Putative C-terminus
sp_v3.0_unigene4452 SustainPine v3.0 805
• AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2B 0.0
Complete
sp_v3.0_unigene4489 SustainPine v3.0 603
• AutoFact: Unassigned protein
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Putative polyprotein 1.103e-09
C-terminus
sp_v3.0_unigene4490 SustainPine v3.0 439
• AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 2.0e-25
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene4491 SustainPine v3.0 555
• AutoFact: DNA-dependent protein kinase subunit [Dictyostelium discoideum AX4] sp|Q54UC0.2|PRKDC_DICDI RecName: Full=DNA-dependent protein kinase catalytic subunit; Short=DNA-PK catalytic subunit; Short=DNA-PKcs gb|EAL66880.2| DNA-dependent protein kinase subunit [D 4.0e-06
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain