Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene3748 SustainPine v3.0 1141
AutoFact: PLAC8 family protein [Arabidopsis thaliana] sp|P0CW97.1|PCR3_ARATH RecName: Full=Protein PLANT CADMIUM RESISTANCE 3; Short=AtPCR3 gb|AED93976.1| PLAC8 family protein [Arabidopsis thaliana] 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: PGPS/D12 6.352e-20
Complete
sp_v3.0_unigene3753 SustainPine v3.0 3829
AutoFact: enhancer of zeste-like 1 [Zea mays] 0.0
FL-Next: sp=Histone-lysine N-methyltransferase EZ1; Zea mays (Maize). 0.0
Sma3: Enhancer of zeste, ezh, putative 1.79e-08
Complete
sp_v3.0_unigene3761 SustainPine v3.0 2349
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SRS4_RICCO 0.0
FL-Next: sp=B3 domain-containing protein Os07g0563300; Oryza sativa subsp. japonica (Rice). 0.0
C-terminus
sp_v3.0_unigene3764 SustainPine v3.0 2271
AutoFact: DNA repair protein recA-like 3 [Arabidopsis thaliana] sp|Q9ZUP2.2|RECA3_ARATH RecName: Full=DNA repair protein recA homolog 3, mitochondrial; AltName: Full=Recombinase A homolog 3; Flags: Precursor gb|ABM06015.1| At2g19490 [Arabidopsis thaliana] gb|AEC068 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA repair protein reca, putative 1.362e-11
Complete
sp_v3.0_unigene3789 SustainPine v3.0 3266
AutoFact: high mobility group-box and ARID domain-binding domain-containing protein [Arabidopsis thaliana] sp|Q9MAT6.1|HMG15_ARATH RecName: Full=High mobility group B protein 15; AltName: Full=Nucleosome/chromatin assembly factor group D 15 gb|AAF40449.1|AC004809_7 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: High mobility group family 1.404e-10
Complete
sp_v3.0_unigene3794 SustainPine v3.0 2975
AutoFact: human Mi-2 autoantigen-like protein [Arabidopsis thaliana] dbj|BAB08833.1| helicase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 family DNA-dependent ATPase 5.211e-11
Putative Complete
sp_v3.0_unigene3809 SustainPine v3.0 1437
AutoFact: homeodomain protein HB2 [Populus tomentosa] 0.0
FL-Next: sp=WUSCHEL-related homeobox 8; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: WUSCHEL-related homeobox 14 3.401e-08
Complete
sp_v3.0_unigene3828 SustainPine v3.0 2917
AutoFact: DsRNA-specific nuclease dicer and related ribonuclease n=2 Tax=Physcomitrella patens RepID=A9RV91_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DsRNA-specific nuclease dicer and related ribonuclease 1.06e-11
Putative Complete
sp_v3.0_unigene3864 SustainPine v3.0 2466
AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 0.0
FL-Next: sp=FACT complex subunit SSRP1; Vicia faba (Broad bean) (Faba vulgaris). 0.0
Sma3: Recombination signal sequence recognition protein 1 5.23e-17
Complete
sp_v3.0_unigene3869 SustainPine v3.0 1073
AutoFact: High mobility group protein n=1 Tax=Cucumis sativus RepID=Q4ZH67_CUCSA 6.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene3872 SustainPine v3.0 2414
AutoFact: Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] dbj|BAB09690.1| unnamed protein product [Arabidopsis thaliana] gb|AED90833.1| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene3890 SustainPine v3.0 2993
AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] sp|A9LNK9.1|CPSF_ARATH RecName: Full=Cleavage and polyadenylation specificity factor CPSF30; AltName: Full=Zinc finger CCCH domain-containing protein 11; Short=AtC3H11 gb|ABX260 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene3891 SustainPine v3.0 1848
AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 0.0
FL-Next: sp=FACT complex subunit SSRP1; Vicia faba (Broad bean) (Faba vulgaris). 0.0
Sma3: Recombination signal sequence recognition protein 1 5.599e-17
N-terminus
sp_v3.0_unigene3942 SustainPine v3.0 2993
AutoFact: DNA polymerase V [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene4030 SustainPine v3.0 1613
AutoFact: transcription factor Pur-alpha 1 [Arabidopsis thaliana] gb|AAL31888.1|AF419556_1 At2g32080/F22D22.17 [Arabidopsis thaliana] gb|AEC08632.1| transcription factor Pur-alpha 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene4051 SustainPine v3.0 1344
AutoFact: BAH-PHD domain-containing protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TSM0_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ebs-bah-phd domain-containing protein 1.191e-14
Complete
sp_v3.0_unigene4074 SustainPine v3.0 857
AutoFact: DNA repair protein RAD51-like 4 [Arabidopsis thaliana] gb|AEE28174.1| DNA repair protein RAD51-like 4 [Arabidopsis thaliana] 1.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene4110 SustainPine v3.0 1952
AutoFact: methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] ref|NP_974850.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] ref|NP_001190421.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] sp|Q8LA53.1|MBD2_ARATH RecName: Full=M 0.0
FL-Next: sp=Methyl-CpG-binding domain-containing protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Methyl binding domain protein 4.644e-07
Complete
sp_v3.0_unigene4122 SustainPine v3.0 3573
AutoFact: DNA replication licensing factor MCM5 [Aspergillus niger CBS 513.88] emb|CAK44374.1| unnamed protein product [Aspergillus niger] 0.0
FL-Next: tr=Os02g0797400 protein; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Chromosome undetermined scaffold_155, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene4134 SustainPine v3.0 1104
AutoFact: Two-component sensor histidine kinase bacteria, putative n=1 Tax=Ricinus communis RepID=B9T4M7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Type-b response regulator 1.149e-32
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain