Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene3214 SustainPine v3.0 2161
AutoFact: sirtuin 1 [Arabidopsis thaliana] gb|AAG44850.1|AF283757_1 sir2-like protein [Arabidopsis thaliana] dbj|BAB09243.1| transcription regulator Sir2-like protein [Arabidopsis thaliana] gb|AED96677.1| sirtuin 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Class IV sirtuin 3.114e-09
Complete
sp_v3.0_unigene3225 SustainPine v3.0 2498
AutoFact: Milkweed pod1 n=1 Tax=Zea mays RepID=B5LZ60_MAIZE 1.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative transfactor 8.665e-09
Complete
sp_v3.0_unigene3246 SustainPine v3.0 1063
AutoFact: Histone-lysine n-methyltransferase, suvh, putative n=1 Tax=Ricinus communis RepID=B9SZ00_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SET domain protein 2.232e-17
C-terminus
sp_v3.0_unigene3249 SustainPine v3.0 1155
AutoFact: Ferritin n=1 Tax=Picea sitchensis RepID=C0PRI0_PICSI 0.0
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ferritin 0.0
Complete
sp_v3.0_unigene3254 SustainPine v3.0 2783
AutoFact: Zinc finger CCCH domain-containing protein 17 n=4 Tax=Oryza sativa RepID=C3H17_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_139, whole genome shotgun sequence 9.727e-13
Complete
sp_v3.0_unigene3263 SustainPine v3.0 1844
AutoFact: MYB transcription factor MYB133 [Glycine max] 0.0
FL-Next: sp=Transcription factor ASG4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: MYB transcription factor 2.891e-21
Complete
sp_v3.0_unigene3264 SustainPine v3.0 1381
AutoFact: Protein ULTRAPETALA 1 n=3 Tax=Arabidopsis RepID=ULT1_ARATH 3.9937e-43
FL-Next: sp=Protein ULTRAPETALA 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene3272 SustainPine v3.0 1776
AutoFact: pfam08755, YccV-like, Hemimethylated DNA-binding protein YccV like 8.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein At2g03390 2.274e-09
Complete
sp_v3.0_unigene3278 SustainPine v3.0 2534
AutoFact: putative AT-hook DNA-binding protein [Oryza sativa Japonica Group] gb|EAZ07603.1| hypothetical protein OsI_29854 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA binding protein, putative 4.985e-19
Complete
sp_v3.0_unigene3289 SustainPine v3.0 3041
AutoFact: phaseolin G-box binding protein PG1 [Phaseolus vulgaris] 0.0
FL-Next: tr=JAMYC; Taxus cuspidata (Japanese yew). 0.0
Sma3: MYC transcription factor 1.842e-08
C-terminus
sp_v3.0_unigene3296 SustainPine v3.0 2028
AutoFact: putative type 1 RNA helicase [Oryza sativa Japonica Group] gb|EEE67210.1| hypothetical protein OsJ_24327 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptide deformylase 1.11e-15
Putative Complete
sp_v3.0_unigene3315 SustainPine v3.0 1607
AutoFact: ZF-HD homeobox protein [Flaveria bidentis] 9.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Zinc finger-homeodomain protein 1 1.381e-24
C-terminus
sp_v3.0_unigene3321 SustainPine v3.0 605
AutoFact: FAP multi-domain protein 5.0e-20
Sma3: Glycine-rich protein 5.632e-13
coding
sp_v3.0_unigene3368 SustainPine v3.0 1546
AutoFact: Single bromodomain-containing protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T0X0_PHYPA 1.0e-31
FL-Next: sp=Transcription factor GTE9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene3383 SustainPine v3.0 2624
AutoFact: signal recognition particle subunit SRP72 [Arabidopsis thaliana] gb|AAG28892.1|AC008113_8 F12A21.17 [Arabidopsis thaliana] gb|AAO41909.1| unknown protein [Arabidopsis thaliana] gb|AAO50689.1| unknown protein [Arabidopsis thaliana] gb|AEE34681.1| signal re 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene3388 SustainPine v3.0 5791
AutoFact: DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] sp|Q8RXS6.2|INO80_ARATH RecName: Full=DNA helicase INO80; Short=AtINO80; AltName: Full=Putative DNA helicase INO80 complex homolog 1 gb|AEE79637.1| DNA helicase INO80 complex-like 1 [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SWR1 complex protein, SNF2 family DNA-dependent ATPase 3.603e-08
Complete
sp_v3.0_unigene3439 SustainPine v3.0 1860
AutoFact: Aprataxin, putative n=1 Tax=Ricinus communis RepID=B9SWY0_RICCO 0.0
FL-Next: sp=Transcription factor bHLH140; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene3444 SustainPine v3.0 3832
AutoFact: Bel1 homeotic protein, putative n=1 Tax=Ricinus communis RepID=B9SDI4_RICCO 0.0
FL-Next: tr=Homeobox transcription factor KN4; Picea mariana (Black spruce) (Abies mariana). 0.0
Sma3: Associated with HOX family protein, expressed 6.029e-15
Complete
sp_v3.0_unigene3463 SustainPine v3.0 1474
AutoFact: Putative wuschel homeobox protein WOX8/9 n=1 Tax=Picea abies RepID=D5LMH9_PICAB 0.0
FL-Next: sp=WUSCHEL-related homeobox 11; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative wuschel homeobox protein 5.629e-07
Complete
sp_v3.0_unigene3467 SustainPine v3.0 2205
AutoFact: NAC domain containing protein 28 [Arabidopsis thaliana] gb|AAF06052.1|AC009513_8 Contains similarity to gb|AF123310 NAC domain protein NAM gene from Arabidopsis thaliana gb|AEE34440.1| NAC domain containing protein 28 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NAC domain protein, IPR003441 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain