Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene208924 SustainPine v3.0 444
AutoFact: Unassigned protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene208937 SustainPine v3.0 705
AutoFact: DNA-binding protein MNB1B, putative n=1 Tax=Ricinus communis RepID=B9S139_RICCO 3.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene208955 SustainPine v3.0 594
AutoFact: Histone H4 n=1 Tax=Ostreococcus tauri RepID=Q01FF9_OSTTA 4.0e-22
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 1.127e-11
Complete
sp_v3.0_unigene208967 SustainPine v3.0 640
AutoFact: ABA_WDS domain containing protein 3.0e-20
Sma3: Abscisic stress ripening protein 1.691e-12
putative_coding
sp_v3.0_unigene208979 SustainPine v3.0 333
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 8.0e-30
FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
Sma3: Cytochrome c 4.835e-39
Putative C-terminus
sp_v3.0_unigene209003 SustainPine v3.0 309
AutoFact: Histone domain containing protein 6.0e-16
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
N-terminus
sp_v3.0_unigene209004 SustainPine v3.0 362
AutoFact: Heat shock protein, putative n=1 Tax=Ricinus communis RepID=B9RCG8_RICCO 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heat shock protein 90 0.0
N-terminus
sp_v3.0_unigene209050 SustainPine v3.0 295
AutoFact: pre-mRNA branch site protein p14 [Arabidopsis thaliana] ref|XP_002873554.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] sp|Q9FMP4.1|PM14_ARATH RecName: Full=Pre-mRNA branch site p14-like protein dbj|BAB10037.1| unnamed prot 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
N-terminus
sp_v3.0_unigene209075 SustainPine v3.0 322
AutoFact: Histone H2A n=1 Tax=Picea sitchensis RepID=A9NTX3_PICSI 1.0e-15
FL-Next: sp=Histone H2A; Pinus taeda (Loblolly pine). 0.0
Sma3: Histone H2A 0.0
N-terminus
sp_v3.0_unigene209112 SustainPine v3.0 300
AutoFact: Putative MADS box transcription factor PrMADS7 n=1 Tax=Pinus radiata RepID=O24491_PINRA 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: MADS-box transcription factor 6.341e-20
Putative N-terminus
sp_v3.0_unigene209113 SustainPine v3.0 346
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 5.00264e-43
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 4.247e-29
N-terminus
sp_v3.0_unigene209141 SustainPine v3.0 615
AutoFact: Kelch repeat containing protein n=3 Tax=Oryza sativa RepID=Q6ZXK6_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene209168 SustainPine v3.0 760
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 9.99967e-42
FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
Sma3: Putative histone H4 0.0
Complete
sp_v3.0_unigene209195 SustainPine v3.0 844
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 7.0e-33
FL-Next: tr=Putative histone H1; Pinus pinaster (Maritime pine). 0.0
Sma3: Putative histone H1 0.0
C-terminus
sp_v3.0_unigene209200 SustainPine v3.0 649
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 0.0
FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2B 6.485e-33
C-terminus
sp_v3.0_unigene209203 SustainPine v3.0 579
AutoFact: Putative MADS box transcription factor PrMADS4 n=1 Tax=Pinus radiata RepID=O24488_PINRA 4.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene209215 SustainPine v3.0 387
AutoFact: 26S proteasome regulatory subunit (Fragment) n=1 Tax=Gossypium hirsutum RepID=A6MUT2_GOSHI 2.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 26S proteasome regulatory subunit 1.215e-06
Internal
sp_v3.0_unigene209222 SustainPine v3.0 282
AutoFact: CCR4-NOT transcription complex subunit 6 n=1 Tax=Zea mays RepID=B6SJQ2_MAIZE 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Misassembled
sp_v3.0_unigene209294 SustainPine v3.0 523
AutoFact: Peptidyl-prolyl cis-trans isomerase-like 3 n=2 Tax=Dictyostelium RepID=PPIL3_DICDI 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene209302 SustainPine v3.0 670
AutoFact: Ethylene-responsive element binding factor-like protein n=5 Tax=Picea sitchensis RepID=E0ZGY9_PICSI 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 2.114e-34
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain