Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene208586 SustainPine v3.0 541
AutoFact: cullin 3B [Arabidopsis thaliana] sp|Q9C9L0.1|CUL3B_ARATH RecName: Full=Cullin-3B; Short=AtCUL3b gb|AAG52544.1|AC013289_11 putative cullin; 66460-68733 [Arabidopsis thaliana] gb|AEE34961.1| cullin 3B [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative cullin protein 3.22e-12
Internal
sp_v3.0_unigene208593 SustainPine v3.0 481
AutoFact: Zinc finger CCCH domain-containing protein 37 n=3 Tax=Arabidopsis RepID=C3H37_ARATH 3.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene208596 SustainPine v3.0 394
AutoFact: SCARECROW n=1 Tax=Pinus sylvestris RepID=Q0MRQ2_PINSY 0.0
FL-Next: tr=SCARECROW; Pinus sylvestris (Scots pine). 0.0
Sma3: GRAS family transcription factor 1.12e-20
Internal
sp_v3.0_unigene208621 SustainPine v3.0 575
AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 2.0e-28
FL-Next: tr=Putative uncharacterized protein; Lotus japonicus (Lotus corniculatus var. japonicus). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.444e-28
Internal
sp_v3.0_unigene208627 SustainPine v3.0 514
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cyclin-L1-1 3.392e-09
Internal
sp_v3.0_unigene208644 SustainPine v3.0 337
AutoFact: Unassigned protein
FL-Next: sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: WD-repeat protein, putative 1.642e-07
Internal
sp_v3.0_unigene208662 SustainPine v3.0 247
AutoFact: Enolase n=2 Tax=Selaginella moellendorffii RepID=D8R303_SELML 4.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Enolase 1.512e-30
C-terminus
sp_v3.0_unigene208683 SustainPine v3.0 407
AutoFact: transcriptional activator DEMETER [Arabidopsis thaliana] sp|Q8LK56.2|DME_ARATH RecName: Full=Transcriptional activator DEMETER; AltName: Full=DNA glycosylase-related protein DME gb|ABC61677.1| DNA glycosylase DEMETER [Arabidopsis thaliana] gb|AED90761.1| 5.60519e-45
FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 1.514e-08
Internal
sp_v3.0_unigene208697 SustainPine v3.0 341
AutoFact: Histone deacetylase (Fragment) n=7 Tax=rosids RepID=D7SM47_VITVI 6.0e-25
FL-Next: sp=Histone deacetylase 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone deacetylase 1.207e-15
N-terminus
sp_v3.0_unigene208703 SustainPine v3.0 323
AutoFact: PHD domain containing protein 2.0e-10
FL-Next: sp=Homeobox protein HOX1A; Zea mays (Maize). 0.0
Sma3: Pathogenesis-related homeodomain protein 1.514e-08
Internal
sp_v3.0_unigene208713 SustainPine v3.0 290
AutoFact: MADS-box gene 2 protein [Lycopodium annotinum] 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene208714 SustainPine v3.0 289
AutoFact: Putative MADS box transcription factor PrMADS4 n=1 Tax=Pinus radiata RepID=O24488_PINRA 1.0e-33
FL-Next: tr=Putative MADS box transcription factor PrMADS8; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Internal
sp_v3.0_unigene208774 SustainPine v3.0 286
AutoFact: Topless-related protein 1 [Arabidopsis thaliana] sp|Q0WV90.3|TPR1_ARATH RecName: Full=Topless-related protein 1; AltName: Full=Protein MODIFIER OF SNC1 10 gb|AEE36412.1| Topless-related protein 1 [Arabidopsis thaliana] 2.0e-13
FL-Next: sp=Topless-related protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: WD-40 repeat protein-like 7.003e-07
Internal
sp_v3.0_unigene208788 SustainPine v3.0 228
AutoFact: Putative phosphate transporter n=1 Tax=Cryptomeria japonica RepID=Q1XG57_CRYJA 2.0e-08
FL-Next: tr=Putative phosphate transporter; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
Sma3: Phosphate transporter 8.042e-33
N-terminus
sp_v3.0_unigene208803 SustainPine v3.0 190
AutoFact: Probable nucleolar protein 5-2 n=2 Tax=Arabidopsis RepID=NOP5B_ARATH 3.0e-18
FL-Next: sp=Probable nucleolar protein 5-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Nucleolar RNA binding protein 6.195e-09
Internal
sp_v3.0_unigene208813 SustainPine v3.0 101
AutoFact: Enolase n=3 Tax=Picea sitchensis RepID=B8LL07_PICSI 2.0e-10
FL-Next: sp=Enolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Enolase 0.0
Internal
sp_v3.0_unigene208818 SustainPine v3.0 297
AutoFact: putative actin [Oryza sativa Japonica Group] 4.0e-19
FL-Next: sp=Actin-related protein 7; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Actin-related protein ARP7 9.88e-10
Internal
sp_v3.0_unigene208845 SustainPine v3.0 190
AutoFact: Unassigned protein
FL-Next: sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene208868 SustainPine v3.0 124
AutoFact: Ku P80 DNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RDD3_RICCO 2.0e-09
FL-Next: tr=KU80-like protein; Pinus sylvestris (Scots pine). 0.0
Internal
sp_v3.0_unigene208871 SustainPine v3.0 98
AutoFact: Serine hydroxymethyltransferase n=4 Tax=Arabidopsis RepID=Q8GRI1_ARATH 1.0e-10
FL-Next: sp=Serine hydroxymethyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine hydroxymethyltransferase 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain