Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene207674 SustainPine v3.0 392
• AutoFact: Water deficit stress inducible protein LP3-2 (Fragment) n=6 Tax=Pinus RepID=Q41096_PINTA 3.0e-22
• FL-Next: tr=LP3-1; Pinus taeda (Loblolly pine). 0.0
• Sma3: Abscisic stress ripening protein 2 3.175e-12
N-terminus
sp_v3.0_unigene207676 SustainPine v3.0 554
• AutoFact: ASR protein n=1 Tax=Ginkgo biloba RepID=Q6S9Z8_GINBI 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Abscisic stress ripening protein 2.151e-16
Putative Complete
sp_v3.0_unigene207677 SustainPine v3.0 410
• AutoFact: ASR protein n=1 Tax=Ginkgo biloba RepID=Q6S9Z8_GINBI 7.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Abscisic stress ripening protein 2 5.559e-12
Putative Complete
sp_v3.0_unigene207687 SustainPine v3.0 1196
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_83.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SMH3_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP binding protein, putative 1.831e-11
C-terminus
sp_v3.0_unigene207698 SustainPine v3.0 1002
• AutoFact: TauD domain containing protein 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene207709 SustainPine v3.0 810
• AutoFact: small ubiquitin-related modifier 1 [Arabidopsis thaliana] sp|P55852.2|SUMO1_ARATH RecName: Full=Small ubiquitin-related modifier 1; Short=AtSUMO1; AltName: Full=Ubiquitin-like protein SMT3 emb|CAB36530.1| ubiquitin-like protein [Arabidopsis thaliana] emb| 4.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin-like protein SMT3 6.852e-16
Putative Complete
sp_v3.0_unigene207711 SustainPine v3.0 793
• AutoFact: Histone H1-like protein (Fragment) n=15 Tax=Picea sitchensis RepID=E0ZG68_PICSI 6.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H1 0.0
Putative Complete
sp_v3.0_unigene207717 SustainPine v3.0 737
• AutoFact: Chaperone n=7 Tax=Agave tequilana RepID=A4ZF46_AGATE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heat-shock protein, putative 1.475e-33
Complete
sp_v3.0_unigene207719 SustainPine v3.0 724
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TX75_VITVI 4.0e-23
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus
sp_v3.0_unigene207722 SustainPine v3.0 709
• AutoFact: Histone H2A n=1 Tax=Populus trichocarpa RepID=B9I7E7_POPTR 8.0e-25
• FL-Next: sp=Histone H2A; Pinus taeda (Loblolly pine). 0.0
• Sma3: Histone H2A 0.0
Putative Complete
sp_v3.0_unigene207730 SustainPine v3.0 690
• AutoFact: poly(A) polymerase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Poly(A) polymerase 3.799e-14
Internal
sp_v3.0_unigene207731 SustainPine v3.0 689
• AutoFact: Histone H2A.6 n=6 Tax=Spermatophyta RepID=H2A6_ARATH 2.0e-25
• FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2A 0.0
Putative Complete
sp_v3.0_unigene207732 SustainPine v3.0 685
• AutoFact: Histone H3 n=1 Tax=Caenorhabditis remanei RepID=E3M3Z3_CAERE 0.0
• FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene207736 SustainPine v3.0 666
• AutoFact: R2R3-MYB transcription factor MYB20 (Fragment) n=1 Tax=Picea glauca RepID=C0JTD4_PICGL 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MYB transcription factor 3.134e-24
Putative Complete
sp_v3.0_unigene207752 SustainPine v3.0 617
• AutoFact: 26S protease regulatory subunit 7 homolog A n=26 Tax=Embryophyta RepID=PRS7A_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Proteasomal ATPase 3.843e-14
C-terminus
sp_v3.0_unigene207756 SustainPine v3.0 600
• AutoFact: bHLH transcription factor [Brassica napus] 3.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene207764 SustainPine v3.0 592
• AutoFact: similar to FLAP endonuclease-1 (SW:P39748) [Arabidopsis thaliana] 2.0e-21
• FL-Next: sp=Flap endonuclease 1-B; Physcomitrella patens subsp. patens (Moss). 0.0
• Sma3: Flap endonuclease 1a 4.233e-09
Internal
sp_v3.0_unigene207768 SustainPine v3.0 582
• AutoFact: Water deficit inducible LP3-like protein (Fragment) n=7 Tax=Pseudotsuga menziesii var. menziesii RepID=Q5MDH5_PSEMZ 2.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Abscisic stress ripening protein 7.428e-17
Putative Complete
sp_v3.0_unigene207787 SustainPine v3.0 549
• AutoFact: Putative DEAD-box protein abstrakt n=1 Tax=Trifolium pratense RepID=Q2PEY4_TRIPR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 9.916e-12
Internal
sp_v3.0_unigene207797 SustainPine v3.0 528
• AutoFact: Actin-11 n=180 Tax=Spermatophyta RepID=ACT11_ARATH 0.0
• FL-Next: tr=Actin 4; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Actin 2.031e-37
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain