Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene206664 SustainPine v3.0 362
• AutoFact: DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative [Musa balbisiana] 6.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene206682 SustainPine v3.0 449
• AutoFact: AP2 domain class transcription factor n=1 Tax=Malus x domestica RepID=D5L111_MALDO 4.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ethylene-responsive transcription factor 1A 1.328e-08
Putative C-terminus
sp_v3.0_unigene206700 SustainPine v3.0 818
• AutoFact: Gly_rich multi-domain protein 7.0e-19
• Sma3: Transposon protein, putative, CACTA, En/Spm sub-class, expressed 1.183e-17
coding
sp_v3.0_unigene206705 SustainPine v3.0 643
• AutoFact: WD-40 repeat family protein [Arabidopsis thaliana] dbj|BAB09017.1| unnamed protein product [Arabidopsis thaliana] gb|AAL15328.1| AT5g67320/K8K14_4 [Arabidopsis thaliana] gb|AAN28871.1| At5g67320/K8K14_4 [Arabidopsis thaliana] gb|AED98328.1| WD-40 repeat f 2.0e-28
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene206715 SustainPine v3.0 1092
• AutoFact: ASR protein n=1 Tax=Ginkgo biloba RepID=Q6S9Z8_GINBI 7.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Abscisic stress ripening protein 9.484e-17
Complete
sp_v3.0_unigene206716 SustainPine v3.0 885
• AutoFact: Polcalcin Jun o, putative n=1 Tax=Ricinus communis RepID=B9SJ25_RICCO 3.0e-31
• FL-Next: sp=Probable calcium-binding protein CML25; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Polcalcin Jun o 2 1.295e-10
Complete
sp_v3.0_unigene206719 SustainPine v3.0 406
• AutoFact: Calcium binding protein with EF-hand motif (Fragment) n=4 Tax=Pseudotsuga RepID=C6F9S2_PSEMZ 4.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ccd1, putative 2.393e-15
N-terminus
sp_v3.0_unigene206756 SustainPine v3.0 488
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_36.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=E0CU91_VITVI 1.0e-30
• FL-Next: sp=Ubiquitin; Avena sativa (Oat). 0.0
Complete
sp_v3.0_unigene206803 SustainPine v3.0 611
• AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 8.00001e-42
• FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
• Sma3: Putative histone H4 0.0
Complete
sp_v3.0_unigene206814 SustainPine v3.0 620
• AutoFact: TINY transcription factor n=1 Tax=Arachis hypogaea RepID=E4W7U9_ARAHY 2.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RAP2-like protein 3.691e-27
N-terminus
sp_v3.0_unigene206815 SustainPine v3.0 332
• AutoFact: ABA_WDS domain containing protein 1.0e-19
• Sma3: Abscisic stress ripening protein 2.971e-17
coding
sp_v3.0_unigene206837 SustainPine v3.0 525
• AutoFact: Actophorin n=1 Tax=Acanthamoeba castellanii RepID=ACTP_ACACA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Actin-depolymerizing factor 1.737e-24
Complete
sp_v3.0_unigene206845 SustainPine v3.0 631
• AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 9.705e-11
Putative C-terminus
sp_v3.0_unigene206852 SustainPine v3.0 942
• AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 7.00005e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2B 5.615e-36
Putative Complete
sp_v3.0_unigene206958 SustainPine v3.0 1256
• AutoFact: Glutathione S-transferase-like protein n=13 Tax=Picea sitchensis RepID=C0PR46_PICSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glutathione S-transferase 0.0
Complete
sp_v3.0_unigene206970 SustainPine v3.0 576
• AutoFact: Actin-2 n=10 Tax=Bilateria RepID=F1L3U5_ASCSU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Actin 2.386e-32
C-terminus
sp_v3.0_unigene207021 SustainPine v3.0 544
• AutoFact: 40S ribosomal protein S23 n=32 Tax=leotiomyceta RepID=RS23_ASPFU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 1.975e-10
Complete
sp_v3.0_unigene207119 SustainPine v3.0 901
• AutoFact: rve domain containing protein 2.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 8.155e-12
Internal
sp_v3.0_unigene207124 SustainPine v3.0 381
• AutoFact: LP3-1 n=11 Tax=Pinus RepID=Q41087_PINTA 2.0e-17
• FL-Next: tr=LP3-1; Pinus taeda (Loblolly pine). 0.0
• Sma3: Abscisic stress ripening protein 2 1.626e-12
N-terminus
sp_v3.0_unigene207129 SustainPine v3.0 624
• AutoFact: LOB domain protein 1, putative n=1 Tax=Solanum demissum RepID=Q6L463_SOLDE 2.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LOB domain-containing protein, putative 3.493e-09
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain