Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene206286 SustainPine v3.0 1024
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_13.assembly12x (Fragment) n=5 Tax=Vitis vinifera RepID=D7U728_VITVI 0.0
• FL-Next: sp=Germin-like protein 1-3; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Germin-like protein 3.729e-40
Complete
sp_v3.0_unigene206314 SustainPine v3.0 818
• AutoFact: Putative MADS box transcription factor PrMADS9 n=1 Tax=Pinus radiata RepID=O24487_PINRA 0.0
• FL-Next: tr=Putative MADS box transcription factor PrMADS9; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: AGAMOUS-like protein 6.041e-19
Putative Complete
sp_v3.0_unigene206356 SustainPine v3.0 755
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.917e-22
Internal
sp_v3.0_unigene206358 SustainPine v3.0 533
• AutoFact: Copia-type reverse transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M197_ARATH 1.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copia-type polyprotein 6.038e-11
Internal
sp_v3.0_unigene206359 SustainPine v3.0 634
• AutoFact: Polyprotein n=1 Tax=Drosophila melanogaster RepID=B6V6Z8_DROME 4.2039e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.734e-24
Internal
sp_v3.0_unigene206364 SustainPine v3.0 611
• AutoFact: MADS-box transcription factor n=4 Tax=Spermatophyta RepID=Q8LKX2_9SPER 7.0e-40
• FL-Next: tr=MADS box protein; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: AGAMOUS-like protein 2.943e-26
N-terminus
sp_v3.0_unigene206418 SustainPine v3.0 347
• AutoFact: Putative MADS domain transcription factor GGM10 n=1 Tax=Gnetum gnemon RepID=Q9XGJ7_GNEGN 1.0e-24
• FL-Next: tr=Putative MADS-box family transcription factor; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: AGAMOUS-like protein 6.691e-28
N-terminus
sp_v3.0_unigene206431 SustainPine v3.0 390
• AutoFact: Germin A n=1 Tax=Elaeis guineensis RepID=B3TLX7_ELAGV 3.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rhicadhesin receptor, putative 1.933e-26
N-terminus
sp_v3.0_unigene206439 SustainPine v3.0 402
• AutoFact: Unassigned protein
• FL-Next: Isoform 2 of Trihelix transcription factor GTL1 OS=Arabidopsis thaliana GN=GTL1 0.0
• Sma3: GT-2 factor 8.448e-08
Putative N-terminus
sp_v3.0_unigene206440 SustainPine v3.0 490
• AutoFact: Eukaryotic translation initiation factor 5A-1 n=5 Tax=core eudicotyledons RepID=IF5A1_ARATH 8.00001e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 4.954e-28
Putative Complete
sp_v3.0_unigene206452 SustainPine v3.0 384
• AutoFact: HSP20 domain containing protein 4.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heat-shock protein, putative 1.402e-27
N-terminus
sp_v3.0_unigene206473 SustainPine v3.0 591
• AutoFact: rve domain containing protein 3.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.12e-30
Internal
sp_v3.0_unigene206497 SustainPine v3.0 618
• AutoFact: Histidine-containing phosphotransfer protein, putative n=1 Tax=Ricinus communis RepID=B9RSW5_RICCO 6.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histidine phosphotransfer protein 1.005e-25
Putative Complete
sp_v3.0_unigene206560 SustainPine v3.0 587
• AutoFact: Cysteine synthase n=1 Tax=Picea sitchensis RepID=A9NRJ4_PICSI 5.0e-22
• FL-Next: sp=Cysteine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cysteine synthase 0.0
N-terminus
sp_v3.0_unigene206578 SustainPine v3.0 446
• AutoFact: Putative MADS domain transcription factor GGM11 n=1 Tax=Gnetum gnemon RepID=Q9XGJ6_GNEGN 7.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MADS box protein 2.68e-19
N-terminus
sp_v3.0_unigene206584 SustainPine v3.0 515
• AutoFact: RVT_2 domain containing protein 8.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.432e-10
Putative C-terminus
sp_v3.0_unigene206587 SustainPine v3.0 963
• AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.132e-14
N-terminus
sp_v3.0_unigene206625 SustainPine v3.0 379
• AutoFact: Ubiquitin/ribosomal fusion protein n=1 Tax=Loa loa RepID=E1FY98_LOALO 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene206641 SustainPine v3.0 261
• AutoFact: Copia-like retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9ZQE4_ARATH 9.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gag-Pol polyprotein 2.641e-07
Internal
sp_v3.0_unigene206650 SustainPine v3.0 432
• AutoFact: chaperone DNA J2 [Zea mays] gb|AAC08009.1| DnaJ-related protein ZMDJ1 [Zea mays] gb|ACF78499.1| unknown [Zea mays] gb|ACG32917.1| dnaJ protein [Zea mays] gb|ACL53813.1| unknown [Zea mays] gb|ACN34490.1| unknown [Zea mays] gb|ACR38444.1| unknown [Zea mays] 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DnaJ protein 3.583e-14
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain