Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene3263 SustainPine v3.0 1844
AutoFact: MYB transcription factor MYB133 [Glycine max] 0.0
FL-Next: sp=Transcription factor ASG4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: MYB transcription factor 2.891e-21
Complete
sp_v3.0_unigene3264 SustainPine v3.0 1381
AutoFact: Protein ULTRAPETALA 1 n=3 Tax=Arabidopsis RepID=ULT1_ARATH 3.9937e-43
FL-Next: sp=Protein ULTRAPETALA 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene3266 SustainPine v3.0 3195
AutoFact: [R] COG2940 Proteins containing SET domain 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Set domain protein, putative 4.398e-14
Complete
sp_v3.0_unigene3274 SustainPine v3.0 640
AutoFact: RNA-binding protein n=1 Tax=Nicotiana tabacum RepID=Q941H9_TOBAC 1.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycine-rich RNA-binding protein 6.23199e-41
N-terminus
sp_v3.0_unigene3277 SustainPine v3.0 666
AutoFact: putative cleavage and polyadenylation specificity factor 160 kDa subunit [Arabidopsis thaliana] 0.0
FL-Next: sp=Cleavage and polyadenylation specificity factor subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Probable cleavage and polyadenylation specificity factor subunit 1 7.054e-10
Internal
sp_v3.0_unigene3278 SustainPine v3.0 2534
AutoFact: putative AT-hook DNA-binding protein [Oryza sativa Japonica Group] gb|EAZ07603.1| hypothetical protein OsI_29854 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA binding protein, putative 4.985e-19
Complete
sp_v3.0_unigene3289 SustainPine v3.0 3041
AutoFact: phaseolin G-box binding protein PG1 [Phaseolus vulgaris] 0.0
FL-Next: tr=JAMYC; Taxus cuspidata (Japanese yew). 0.0
Sma3: MYC transcription factor 1.842e-08
C-terminus
sp_v3.0_unigene3294 SustainPine v3.0 3226
AutoFact: Mitochondrial respiratory chain complexes assembly protein AFG3, putative (EC:3.6.4.3); K08956 AFG3 family protein [EC:3.4.24.-] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cell division protease ftsH homolog 1.995e-13
Complete
sp_v3.0_unigene3305 SustainPine v3.0 4215
AutoFact: ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana] gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AAN13185.1| putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AED91040.1| ubiq 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase 1.959e-11
Complete
sp_v3.0_unigene3306 SustainPine v3.0 2469
AutoFact: putative RNA helicase [Oryza sativa Japonica Group] dbj|BAD35820.1| putative RNA helicase [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Sma3: ATP-dependent RNA helicase, putative 7.491e-19
Complete
sp_v3.0_unigene3315 SustainPine v3.0 1607
AutoFact: ZF-HD homeobox protein [Flaveria bidentis] 9.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Zinc finger-homeodomain protein 1 1.381e-24
C-terminus
sp_v3.0_unigene3318 SustainPine v3.0 2048
AutoFact: Carbon catabolite repressor protein, putative n=1 Tax=Ricinus communis RepID=B9RMY1_RICCO 0.0
FL-Next: sp=Uncharacterized calcium-binding protein At1g02270; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Carbon catabolite repressor protein, putative 9.178e-09
Complete
sp_v3.0_unigene3335 SustainPine v3.0 1709
AutoFact: DNA helicase, TBP-interacting protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TL22_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA helicase, TBP-interacting protein 5.005e-12
Complete
sp_v3.0_unigene3351 SustainPine v3.0 2254
AutoFact: Protein phosphtase 2C n=1 Tax=Marchantia polymorpha RepID=D3W6X9_MARPO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein phosphatase 2C 4.661e-26
Complete
sp_v3.0_unigene3374 SustainPine v3.0 2281
AutoFact: protein embryo defective 1703 [Arabidopsis thaliana] emb|CAB71108.1| putative protein [Arabidopsis thaliana] gb|AEE80256.1| protein embryo defective 1703 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene3376 SustainPine v3.0 472
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene3385 SustainPine v3.0 1000
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 4.808e-22
Putative C-terminus
sp_v3.0_unigene3388 SustainPine v3.0 5791
AutoFact: DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] sp|Q8RXS6.2|INO80_ARATH RecName: Full=DNA helicase INO80; Short=AtINO80; AltName: Full=Putative DNA helicase INO80 complex homolog 1 gb|AEE79637.1| DNA helicase INO80 complex-like 1 [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SWR1 complex protein, SNF2 family DNA-dependent ATPase 3.603e-08
Complete
sp_v3.0_unigene3390 SustainPine v3.0 1091
AutoFact: bud site selection protein 31 [Arabidopsis thaliana] ref|XP_002869907.1| G10 family protein [Arabidopsis lyrata subsp. lyrata] gb|AAK95313.1|AF410327_1 AT4g21110/F7J7_50 [Arabidopsis thaliana] emb|CAA17530.1| G10-like protein [Arabidopsis thaliana] emb|CA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene3398 SustainPine v3.0 996
AutoFact: Plastidic phosphate translocator-like protein1 n=1 Tax=Mesembryanthemum crystallinum RepID=Q59IV6_MESCR 9.94922e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Plastidic phosphate translocator-like protein1 4.196e-11
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain