Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene2850 SustainPine v3.0 1663
AutoFact: actin-related protein C1B [Arabidopsis thaliana] gb|AAL27513.1|AF439845_1 At2g31300/F16D14.14 [Arabidopsis thaliana] gb|AAD20675.1| putative ARP2/3 protein complex subunit p41 [Arabidopsis thaliana] gb|AAN18136.1| At2g31300/F16D14.14 [Arabidopsis thaliana 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene2865 SustainPine v3.0 1385
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Complete
sp_v3.0_unigene2888 SustainPine v3.0 2036
AutoFact: R2r3-myb transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S8Y5_RICCO 0.0
FL-Next: tr=R2R3-MYB transcription factor MYB3; Pinus taeda (Loblolly pine). 0.0
Sma3: MYB transcription factor 9.612e-26
Complete
sp_v3.0_unigene2891 SustainPine v3.0 2465
AutoFact: glucan endo-1,3-beta-glucosidase 13 [Arabidopsis thaliana] sp|Q9FJU9.1|E1313_ARATH RecName: Full=Glucan endo-1,3-beta-glucosidase 13; AltName: Full=(1->3)-beta-glucan endohydrolase 13; Short=(1->3)-beta-glucanase 13; AltName: Full=Beta-1,3-endoglucanase 1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glucan endo-1,3-beta-glucosidase, putative 0.0
Complete
sp_v3.0_unigene2896 SustainPine v3.0 1366
AutoFact: PREDICTED: similar to FIO1 (FIONA1) n=1 Tax=Vitis vinifera RepID=UPI0001982DB3 0.0
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
C-terminus
sp_v3.0_unigene2898 SustainPine v3.0 2270
AutoFact: flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein kinase, putative 3.257e-10
Complete
sp_v3.0_unigene2914 SustainPine v3.0 1703
AutoFact: end binding protein 1C [Arabidopsis thaliana] dbj|BAB09646.1| unnamed protein product [Arabidopsis thaliana] gb|AAM65311.1| microtubule-associated protein EB1-like protein [Arabidopsis thaliana] dbj|BAD43258.1| unknown protein [Arabidopsis thaliana] gb|AB 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Microtubule-associated protein EB1-like protein 6.349e-09
Complete
sp_v3.0_unigene2932 SustainPine v3.0 833
AutoFact: DWNN domain-containing protein [Arabidopsis thaliana] gb|AEE83884.1| DWNN domain-containing protein [Arabidopsis thaliana] 2.0e-18
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
N-terminus
sp_v3.0_unigene2934 SustainPine v3.0 1616
AutoFact: putative rRNA-processing protein EBP2-like protein [Arabidopsis thaliana] sp|Q9LUJ5.1|EBP2_ARATH RecName: Full=Probable rRNA-processing protein EBP2 homolog dbj|BAB01241.1| nucleolar protein-like [Arabidopsis thaliana] gb|AAL24270.1| AT3g22660/MWI23_3 [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2942 SustainPine v3.0 892
AutoFact: STYLOSA protein n=1 Tax=Antirrhinum majus RepID=Q6H976_ANTMA 0.0
FL-Next: sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Transcriptional corepressor LEUNIG 4.872e-08
Internal
sp_v3.0_unigene2956 SustainPine v3.0 1564
AutoFact: DNA-directed RNA polymerase n=1 Tax=Selaginella moellendorffii RepID=D8SDS6_SELML 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 1.541e-08
Internal
sp_v3.0_unigene2960 SustainPine v3.0 1499
AutoFact: APO protein 3 [Arabidopsis thaliana] ref|NP_001119475.1| APO protein 3 [Arabidopsis thaliana] sp|Q9FH50.1|APO3_ARATH RecName: Full=APO protein 3, mitochondrial; Flags: Precursor dbj|BAB08879.1| unnamed protein product [Arabidopsis thaliana] gb|AED97538.1| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: APO protein 3, mitochondrial, putative 3.983e-09
Complete
sp_v3.0_unigene2984 SustainPine v3.0 2676
AutoFact: SCP1-like small phosphatase 5 [Arabidopsis thaliana] ref|NP_850809.1| SCP1-like small phosphatase 5 [Arabidopsis thaliana] ref|NP_974767.1| SCP1-like small phosphatase 5 [Arabidopsis thaliana] ref|NP_001078572.1| SCP1-like small phosphatase 5 [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative nuclear LIM factor interactor-interacting protein cleavage-specific form 2.695e-08
Complete
sp_v3.0_unigene3002 SustainPine v3.0 777
AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 4.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Recombination signal sequence recognition protein 1 4.994e-17
Putative Complete
sp_v3.0_unigene3007 SustainPine v3.0 5125
AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 0.0
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Sma3: Gag-Pol polyprotein 6.984e-08
Complete
sp_v3.0_unigene3018 SustainPine v3.0 4426
AutoFact: kinesin like protein for actin based chloroplast movement 2 [Arabidopsis thaliana] dbj|BAB11568.1| unnamed protein product [Arabidopsis thaliana] gb|AED98059.1| kinesin like protein for actin based chloroplast movement 2 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene3023 SustainPine v3.0 1620
AutoFact: Proteasome subunit beta type-3 n=2 Tax=Picea RepID=PSB3_PICMA 0.0
FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene3034 SustainPine v3.0 1713
AutoFact: Putative transcriptional coactivator n=1 Tax=Brassica rapa RepID=Q9AVE8_BRACM 1.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene3066 SustainPine v3.0 905
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Inducer of CBF expression 1 5.633e-12
C-terminus
sp_v3.0_unigene3075 SustainPine v3.0 2848
AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] dbj|BAF01763.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82177.1| AAA-type ATPase family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Sma3: Katanin p60 ATPase-containing subunit, putative 2.636e-07
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain