Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene2332 SustainPine v3.0 475
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SQU6.1|PP216_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06430, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 2750; Flags: Precursor gb|AAF08573.1|AC01 8.00141e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 1.117e-06
Internal
sp_v3.0_unigene2341 SustainPine v3.0 459
• AutoFact: AAA ATPase, central region; L-lactate dehydrogenase [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cell division cycle protein 48 2.38e-13
Internal
sp_v3.0_unigene2343 SustainPine v3.0 2205
• AutoFact: Hexokinase 6 n=1 Tax=Nicotiana tabacum RepID=Q6Q8A0_TOBAC 0.0
• FL-Next: sp=Hexokinase-3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Hexokinase 1.12524e-42
Complete
sp_v3.0_unigene2354 SustainPine v3.0 4198
• AutoFact: Serine/threonine-protein phosphatase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TP64_VITVI 0.0
• FL-Next: sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Serine/threonine protein phosphatase 0.0
Complete
sp_v3.0_unigene2373 SustainPine v3.0 2882
• AutoFact: Cyclin-dependent kinase G-2 n=4 Tax=Oryza sativa RepID=CDKG2_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cyclin dependent kinase 2.947e-13
C-terminus
sp_v3.0_unigene2385 SustainPine v3.0 2196
• AutoFact: transcription factor bHLH30 [Arabidopsis thaliana] sp|Q9S7Y1.1|BH030_ARATH RecName: Full=Transcription factor bHLH30; AltName: Full=Basic helix-loop-helix protein 30; Short=AtbHLH30; Short=bHLH 30; AltName: Full=Transcription factor EN 53; AltName: Full=b 2.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA binding protein, putative 3.593e-06
Putative C-terminus
sp_v3.0_unigene2391 SustainPine v3.0 2584
• AutoFact: DEAD box protein P68 [Pisum sativum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 7.893e-21
Complete
sp_v3.0_unigene2398 SustainPine v3.0 1834
• AutoFact: APO protein 2 [Arabidopsis thaliana] gb|AED96973.1| APO protein 2 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: APO protein 3, mitochondrial, putative 3.983e-09
Complete
sp_v3.0_unigene2400 SustainPine v3.0 873
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SSC2_RICCO 5.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative anthocyanin transcriptional regulator 7.314e-11
Putative Complete
sp_v3.0_unigene2404 SustainPine v3.0 970
• AutoFact: Calcium-binding protein n=1 Tax=Lotus japonicus RepID=Q9SCA1_LOTJA 1.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Calmodulin, putative 3.033e-06
Complete
sp_v3.0_unigene2444 SustainPine v3.0 3636
• AutoFact: pfam03638, CXC, Tesmin/TSO1-like CXC domain 2.0e-21
• FL-Next: sp=Protein tesmin/TSO1-like CXC 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Tso1, putative 5.726e-17
Complete
sp_v3.0_unigene2449 SustainPine v3.0 2853
• AutoFact: Protein regulator of cytokinesis, putative n=1 Tax=Ricinus communis RepID=B9SYY2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Microtubule-associated protein MAP65-1a 5.822e-27
Complete
sp_v3.0_unigene2451 SustainPine v3.0 2490
• AutoFact: Poly [ADP-ribose] polymerase 3 n=1 Tax=Glycine max RepID=PARP3_SOYBN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Poly[ADP-ribose] synthetase 3 2.392e-17
Putative Complete
sp_v3.0_unigene2454 SustainPine v3.0 2940
• AutoFact: Cytosine-specific methyltransferase n=1 Tax=Elaeis guineensis RepID=B4XTS9_ELAGV 0.0
• FL-Next: sp=DNA (cytosine-5)-methyltransferase 3; Zea mays (Maize). 0.0
• Sma3: Cytosine-specific methyltransferase 1.644e-28
C-terminus
sp_v3.0_unigene2468 SustainPine v3.0 1593
• AutoFact: Phospholipase D (Fragment) n=2 Tax=Vitis vinifera RepID=D7TW92_VITVI 0.0
• FL-Next: sp=Phospholipase D; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Phospholipase D 4.78e-33
C-terminus
sp_v3.0_unigene2484 SustainPine v3.0 1298
• AutoFact: DNA polymerase n=1 Tax=Populus trichocarpa RepID=B9HHA9_POPTR 0.0
• FL-Next: sp=DNA polymerase alpha catalytic subunit; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DNA polymerase 5.732e-20
Internal
sp_v3.0_unigene2485 SustainPine v3.0 3456
• AutoFact: [R] COG2319 FOG: WD40 repeat 4.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin ligase protein cop1, putative 9.136e-11
Complete
sp_v3.0_unigene2493 SustainPine v3.0 1993
• AutoFact: pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.482e-18
Putative Complete
sp_v3.0_unigene2501 SustainPine v3.0 3514
• AutoFact: Ank_2 domain containing protein 2.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Zn-finger transcription factor 8.255e-15
Complete
sp_v3.0_unigene2504 SustainPine v3.0 2351
• AutoFact: SWI/SNF complex component SNF12 homolog n=2 Tax=Arabidopsis RepID=SNF12_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: SWI/SNF transcription activation complex subunit 4.502e-14
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain