Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleosome

Term: GO:0000786  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene152402 SustainPine v3.0 506
AutoFact: Histone H4 n=1 Tax=Drosophila virilis RepID=B4LVN2_DROVI 9.99995e-41
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 4.076e-14
Complete
sp_v3.0_unigene152528 SustainPine v3.0 453
AutoFact: Histone H3 n=1 Tax=Harpegnathos saltator RepID=E2BMC4_9HYME 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3.2 0.0
Complete
sp_v3.0_unigene152652 SustainPine v3.0 459
AutoFact: Histone H2B n=2 Tax=Phytophthora infestans T30-4 RepID=D0MY21_PHYIT 5.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 1.525e-34
Putative Complete
sp_v3.0_unigene152653 SustainPine v3.0 317
AutoFact: histone H3.3, putative [Tetrahymena thermophila] sp|Q22RG7.1|H34_TETTH RecName: Full=Histone H3.4; AltName: Full=Minor histone H3 variant gb|EAR88155.1| histone H3.3, putative [Tetrahymena thermophila SB210] 5.0e-08
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 2.124e-25
C-terminus
sp_v3.0_unigene152752 SustainPine v3.0 432
AutoFact: PREDICTED: similar to histone 1, H2ai (predicted) isoform 1 n=2 Tax=Eutheria RepID=UPI00005A57CD 0.0
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
C-terminus
sp_v3.0_unigene153031 SustainPine v3.0 377
AutoFact: Histone H2A n=1 Tax=Ectocarpus siliculosus RepID=D7FVQ5_ECTSI 6.0e-36
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
C-terminus
sp_v3.0_unigene153145 SustainPine v3.0 524
AutoFact: histone H4 [Hyacinthus orientalis] 1.0e-39
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 0.0
Putative Complete
sp_v3.0_unigene153633 SustainPine v3.0 483
AutoFact: Histone H3 (Fragment) n=1 Tax=Solenopsis invicta RepID=E9IYV7_SOLIN 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene153758 SustainPine v3.0 434
AutoFact: Histone H4, major n=31 Tax=Oligohymenophorea RepID=H41_TETPY 2.0e-37
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 3.046e-09
Complete
sp_v3.0_unigene153834 SustainPine v3.0 222
AutoFact: [B] COG5262 Histone H2A 1.0e-18
FL-Next: sp=Histone H2A; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2A 0.0
N-terminus
sp_v3.0_unigene154180 SustainPine v3.0 366
AutoFact: Histone H3 (Fragment) n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7Z9Z6_NECH7 3.0e-18
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 1.333e-18
N-terminus
sp_v3.0_unigene154222 SustainPine v3.0 158
AutoFact: Histone H4, major n=31 Tax=Oligohymenophorea RepID=H41_TETPY 2.0e-18
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 6.385e-07
Putative C-terminus
sp_v3.0_unigene154321 SustainPine v3.0 433
AutoFact: Histone H2A n=15 Tax=Embryophyta RepID=A5AKG7_VITVI 0.0
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene154338 SustainPine v3.0 458
AutoFact: Ribosomal protein L37 n=2 Tax=Sclerotiniaceae RepID=A7F605_SCLS1 7.0e-36
FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L37 0.0
Complete
sp_v3.0_unigene154350 SustainPine v3.0 297
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Monodelphis domestica RepID=UPI00020F6110 2.0e-26
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 3.152e-27
Putative N-terminus
sp_v3.0_unigene154472 SustainPine v3.0 517
AutoFact: Histone H4, major n=31 Tax=Oligohymenophorea RepID=H41_TETPY 2.0e-35
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 1.127e-11
Complete
sp_v3.0_unigene154485 SustainPine v3.0 348
AutoFact: Histone H3 n=1 Tax=Culex quinquefasciatus RepID=B0X693_CULQU 8.0e-25
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 4.092e-25
N-terminus
sp_v3.0_unigene154517 SustainPine v3.0 359
AutoFact: Histone H2A n=2 Tax=Phytophthora infestans T30-4 RepID=D0MYS4_PHYIT 5.0e-26
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative N-terminus
sp_v3.0_unigene154632 SustainPine v3.0 506
AutoFact: Histone H2A n=1 Tax=Chlorella variabilis RepID=E1Z345_9CHLO 2.94273e-44
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative Complete
sp_v3.0_unigene155076 SustainPine v3.0 111
AutoFact: Histone H2A n=1 Tax=Ricinus communis RepID=B9RF98_RICCO 7.0e-07
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 4.079e-24
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain