Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleosome

Term: GO:0000786  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene145524 SustainPine v3.0 524
AutoFact: Histone H1 linker n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RX26_PHYPA 5.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 8.016e-27
Complete
sp_v3.0_unigene145675 SustainPine v3.0 524
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene145714 SustainPine v3.0 926
AutoFact: Histone H1 linker n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RX26_PHYPA 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 2.24208e-44
Complete
sp_v3.0_unigene145818 SustainPine v3.0 499
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 9.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
N-terminus
sp_v3.0_unigene145820 SustainPine v3.0 387
AutoFact: PREDICTED: histone H2B type 1-N-like n=4 Tax=Eutheria RepID=UPI0001D5EA9B 4.0e-34
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene145946 SustainPine v3.0 429
AutoFact: Putative histone H1 n=1 Tax=Cryptomeria japonica RepID=Q1XG59_CRYJA 6.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 1.396e-35
N-terminus
sp_v3.0_unigene146424 SustainPine v3.0 809
AutoFact: Histone H3 n=2 Tax=Pediculus humanus corporis RepID=E0V960_PEDHC 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene146511 SustainPine v3.0 495
AutoFact: Histone domain containing protein 2.0e-08
Sma3: Histone H3 3.933e-27
putative_coding
sp_v3.0_unigene146660 SustainPine v3.0 221
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 1.0e-19
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 1.599e-26
N-terminus
sp_v3.0_unigene146666 SustainPine v3.0 531
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene146727 SustainPine v3.0 724
AutoFact: Histone H3 n=2 Tax=Pediculus humanus corporis RepID=E0V960_PEDHC 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene147965 SustainPine v3.0 533
AutoFact: Ribosomal protein L37 n=1 Tax=Picea sitchensis RepID=A9NJS5_PICSI 4.0e-21
FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L37 0.0
Putative Complete
sp_v3.0_unigene148299 SustainPine v3.0 415
AutoFact: PREDICTED: similar to Histone H4 replacement CG3379-PC n=3 Tax=Hydra magnipapillata RepID=UPI00019245DA 2.0e-37
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 0.0
Putative Complete
sp_v3.0_unigene148483 SustainPine v3.0 397
AutoFact: Histone H2B.2 n=33 Tax=Spermatophyta RepID=H2B2_SOLLC 9.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 3.238e-38
N-terminus
sp_v3.0_unigene148969 SustainPine v3.0 238
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene150183 SustainPine v3.0 330
AutoFact: Histone H3 n=1 Tax=Oryza sativa Japonica Group RepID=Q53NE3_ORYSJ 2.99878e-43
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Putative C-terminus
sp_v3.0_unigene150271 SustainPine v3.0 369
AutoFact: Histone H3 n=1 Tax=Harpegnathos saltator RepID=E2BMC4_9HYME 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Putative Complete
sp_v3.0_unigene150444 SustainPine v3.0 423
AutoFact: Histone H2B n=7 Tax=Trypanosoma RepID=H2B_TRYCR 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 7.473e-32
C-terminus
sp_v3.0_unigene150595 SustainPine v3.0 327
AutoFact: RecName: Full=Histone H4 3.0e-38
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 3.876e-14
C-terminus
sp_v3.0_unigene150600 SustainPine v3.0 264
AutoFact: Probable 60S ribosomal protein L37-A n=10 Tax=Schizophora RepID=RL371_DROME 1.0e-21
FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L37 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain