Sustainpine_db
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Name: nucleosome

Term: GO:0000786  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene57979 SustainPine v3.0 450
AutoFact: Histone H2A n=8 Tax=Picea sitchensis RepID=A9P2B3_PICSI 3.0e-20
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
C-terminus
sp_v3.0_unigene58256 SustainPine v3.0 385
AutoFact: Histone H3 n=3 Tax=Eukaryota RepID=B6SJQ5_MAIZE 4.0e-39
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 6.84e-23
Putative N-terminus
sp_v3.0_unigene58477 SustainPine v3.0 238
AutoFact: Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA 2.0e-14
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 5.188e-37
N-terminus
sp_v3.0_unigene58564 SustainPine v3.0 171
AutoFact: histone H4 [Hyacinthus orientalis] 1.0e-17
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 2.765e-09
Putative C-terminus
sp_v3.0_unigene58572 SustainPine v3.0 395
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 1.487e-15
Internal
sp_v3.0_unigene60460 SustainPine v3.0 317
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 5.0e-25
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 6.715e-19
N-terminus
sp_v3.0_unigene60587 SustainPine v3.0 273
AutoFact: Histone H3 n=1 Tax=Taeniopygia guttata RepID=B5G4P8_TAEGU 5.0e-22
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
C-terminus
sp_v3.0_unigene65434 SustainPine v3.0 170
AutoFact: Histone H2B protein (Fragment) n=1 Tax=Pinus pinaster RepID=Q8VX93_PINPS 4.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 3.258e-32
Internal
sp_v3.0_unigene65568 SustainPine v3.0 222
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 4.0e-24
FL-Next: tr=Putative histone H1; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H1 1.908e-22
Internal
sp_v3.0_unigene66190 SustainPine v3.0 192
AutoFact: Unassigned protein
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene66710 SustainPine v3.0 396
AutoFact: histone H4 [Hyacinthus orientalis] 3.0e-39
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene66731 SustainPine v3.0 399
AutoFact: Histone H2A n=1 Tax=Oryza sativa Japonica Group RepID=B9GDH1_ORYSJ 4.0e-09
FL-Next: sp=Histone H2A; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2A 0.0
Putative N-terminus
sp_v3.0_unigene66906 SustainPine v3.0 157
AutoFact: PREDICTED: histone H4-like n=1 Tax=Pan troglodytes RepID=UPI00020E3732 3.0e-16
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 3.119e-09
Putative N-terminus
sp_v3.0_unigene67064 SustainPine v3.0 278
AutoFact: Histone H3 n=3 Tax=Eukaryota RepID=B6SJQ5_MAIZE 8.0e-11
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
C-terminus
sp_v3.0_unigene67293 SustainPine v3.0 289
AutoFact: Histone H2A n=1 Tax=Sorghum bicolor RepID=C5YYL4_SORBI 1.0e-13
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative N-terminus
sp_v3.0_unigene67553 SustainPine v3.0 247
AutoFact: Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA 3.0e-18
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 1.96182e-44
C-terminus
sp_v3.0_unigene67734 SustainPine v3.0 343
AutoFact: Putative histone H1 n=1 Tax=Cryptomeria japonica RepID=Q1XG59_CRYJA 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene67828 SustainPine v3.0 262
AutoFact: Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA 8.0e-12
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
C-terminus
sp_v3.0_unigene67860 SustainPine v3.0 365
AutoFact: Putative histone H1 n=1 Tax=Cryptomeria japonica RepID=Q1XG59_CRYJA 5.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative histone H1 9.935e-09
N-terminus
sp_v3.0_unigene67863 SustainPine v3.0 407
AutoFact: Putative histone H1 n=1 Tax=Cryptomeria japonica RepID=Q1XG59_CRYJA 7.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative histone H1 1.696e-09
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain