Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribosome

Term: GO:0005840  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene207495 SustainPine v3.0 1228
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 1.0e-31
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Polyprotein 1.349e-16
C-terminus
sp_v3.0_unigene207763 SustainPine v3.0 593
AutoFact: 40S ribosomal protein S29 n=4 Tax=Magnoliophyta RepID=RS29_ARATH 4.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene207769 SustainPine v3.0 581
AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 1.0e-13
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Cold shock domain protein 3 2.275e-08
C-terminus
sp_v3.0_unigene207785 SustainPine v3.0 555
AutoFact: 60S ribosomal protein L38, putative n=1 Tax=Ricinus communis RepID=B9T6H4_RICCO 4.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L38 3.997e-19
Complete
sp_v3.0_unigene207801 SustainPine v3.0 519
AutoFact: 60S ribosomal protein L27a-3 [Arabidopsis thaliana] ref|XP_002888788.1| 60S ribosomal protein L27A [Arabidopsis lyrata subsp. lyrata] sp|P49637.2|R27A3_ARATH RecName: Full=60S ribosomal protein L27a-3 gb|AAG52338.1|AC011663_17 60S ribosomal protein L27A; 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L27a 2.684e-20
Complete
sp_v3.0_unigene207862 SustainPine v3.0 439
AutoFact: Ribosomal protein L37 n=1 Tax=Picea sitchensis RepID=A9NJS5_PICSI 3.0e-25
FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L37 0.0
Complete
sp_v3.0_unigene207864 SustainPine v3.0 438
AutoFact: PREDICTED: similar to 60S ribosomal protein L29 [Vitis vinifera] emb|CAN63474.1| hypothetical protein VITISV_016797 [Vitis vinifera] emb|CBI36938.3| unnamed protein product [Vitis vinifera] 8.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene207871 SustainPine v3.0 430
AutoFact: 40S ribosomal protein S30 [Arabidopsis thaliana] ref|NP_200478.1| 40S ribosomal protein S30 [Arabidopsis thaliana] ref|NP_565458.1| 40S ribosomal protein S30 [Arabidopsis thaliana] ref|XP_002866160.1| 40S ribosomal protein S30 [Arabidopsis lyrata subsp. l 3.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene207957 SustainPine v3.0 320
AutoFact: 40S ribosomal protein S30 [Arabidopsis thaliana] ref|NP_200478.1| 40S ribosomal protein S30 [Arabidopsis thaliana] ref|NP_565458.1| 40S ribosomal protein S30 [Arabidopsis thaliana] ref|XP_002866160.1| 40S ribosomal protein S30 [Arabidopsis lyrata subsp. l 1.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene208047 SustainPine v3.0 224
AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S11 8.625e-11
N-terminus
sp_v3.0_unigene208055 SustainPine v3.0 218
AutoFact: 40S ribosomal protein S3a n=8 Tax=fabids RepID=RS3A_CICAR 7.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S3a 6.1e-21
C-terminus
sp_v3.0_unigene208058 SustainPine v3.0 215
AutoFact: 40S ribosomal protein S8 n=4 Tax=Picea sitchensis RepID=A9NNT7_PICSI 4.0e-24
FL-Next: sp=40S ribosomal protein S8; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein S8 0.0
N-terminus
sp_v3.0_unigene208095 SustainPine v3.0 180
AutoFact: RecName: Full=40S ribosomal protein S3a; AltName: Full=Protein cyc07 dbj|BAA89498.1| cyc07 [Daucus carota] 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S3a 3.897e-25
Internal
sp_v3.0_unigene208166 SustainPine v3.0 123
AutoFact: ORF MSV144 putative ubiquitin, similar to Neurospora crassa GB:U01220 n=1 Tax=Melanoplus sanguinipes entomopoxvirus RepID=Q9YVU8_MSEPV 1.0e-11
FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
Internal
sp_v3.0_unigene208452 SustainPine v3.0 216
AutoFact: 60S ribosomal protein L31 n=5 Tax=Pinaceae RepID=RL31_PICMA 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L31 1.84999e-40
N-terminus
sp_v3.0_unigene208460 SustainPine v3.0 466
AutoFact: 40S ribosomal protein S21 n=2 Tax=Picea sitchensis RepID=A9NJY4_PICSI 5.0e-25
FL-Next: sp=40S ribosomal protein S21; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S21 6.254e-11
Putative Complete
sp_v3.0_unigene208466 SustainPine v3.0 431
AutoFact: 40S ribosomal protein S4-1 [Arabidopsis thaliana] sp|Q93VH9.1|RS41_ARATH RecName: Full=40S ribosomal protein S4-1 gb|AAK43846.1|AF370469_1 Unknown protein [Arabidopsis thaliana] gb|AAK59636.1| putative ribosomal protein S4 [Arabidopsis thaliana] gb|AAL341 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 4.456e-24
N-terminus
sp_v3.0_unigene208474 SustainPine v3.0 902
AutoFact: 40S ribosomal protein S8 n=4 Tax=Picea sitchensis RepID=A9NNT7_PICSI 0.0
FL-Next: sp=40S ribosomal protein S8; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein S8 0.0
Complete
sp_v3.0_unigene208478 SustainPine v3.0 891
AutoFact: 40S ribosomal protein S8 n=4 Tax=Picea sitchensis RepID=A9NNT7_PICSI 0.0
FL-Next: sp=40S ribosomal protein S8; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein S8 0.0
Complete
sp_v3.0_unigene208487 SustainPine v3.0 816
AutoFact: Ubiquitin [Medicago truncatula] 0.0
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Bi-ubiquitin 1.764e-08
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain