Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: tr=Retrotransposon protein, putative, Ty1-copia subclass; Oryza sativa subsp. japonica (Rice).

Source: Description from FL-Next

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene39364 SustainPine v3.0 542
• AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QN29_ORYSJ 2.0e-06
• FL-Next: tr=Retrotransposon protein, putative, Ty1-copia subclass; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene40841 SustainPine v3.0 810
• AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2R1G3_ORYSJ 4.0e-06
• FL-Next: tr=Retrotransposon protein, putative, Ty1-copia subclass; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene49723 SustainPine v3.0 2162
• AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2R0Z7_ORYSJ 6.0e-06
• FL-Next: tr=Retrotransposon protein, putative, Ty1-copia subclass; Oryza sativa subsp. japonica (Rice). 0.0
Putative C-terminus
sp_v3.0_unigene54978 SustainPine v3.0 466
• AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QYZ3_ORYSJ 8.0e-06
• FL-Next: tr=Retrotransposon protein, putative, Ty1-copia subclass; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene61404 SustainPine v3.0 142
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB 3.0e-10
• FL-Next: tr=Retrotransposon protein, putative, Ty1-copia subclass; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Reverse transcriptase 1.031e-12
Internal
sp_v3.0_unigene63488 SustainPine v3.0 249
• AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QYZ3_ORYSJ 2.0e-05
• FL-Next: tr=Retrotransposon protein, putative, Ty1-copia subclass; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene69091 SustainPine v3.0 323
• AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 1.0e-06
• FL-Next: tr=Retrotransposon protein, putative, Ty1-copia subclass; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene162721 SustainPine v3.0 342
• AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QRV1_ORYSJ 5.0e-08
• FL-Next: tr=Retrotransposon protein, putative, Ty1-copia subclass; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene203410 SustainPine v3.0 331
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus coulteri RepID=Q06298_PINCU 9.0e-11
• FL-Next: tr=Retrotransposon protein, putative, Ty1-copia subclass; Oryza sativa subsp. japonica (Rice). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain