Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress).

Source: Description from FL-Next


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene3650 SustainPine v3.0 5676
AutoFact: transcription elongation factor SPT6 [Arabidopsis thaliana] gb|AEE34373.1| transcription elongation factor SPT6 [Arabidopsis thaliana] 0.0
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Global transcription factor group 3.735e-10
Putative N-terminus
sp_v3.0_unigene16572 SustainPine v3.0 529
AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RGA8_RICCO 1.0e-26
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene34378 SustainPine v3.0 577
AutoFact: DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9GWX9_POPTR 5.0e-19
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene41934 SustainPine v3.0 341
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum RepID=Q1L5X7_SOLLC 9.0e-07
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene48105 SustainPine v3.0 236
AutoFact: RNA polymerase IV largest subunit [Arabidopsis thaliana] 8.0e-14
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene50815 SustainPine v3.0 160
AutoFact: DNA-directed RNA polymerase n=2 Tax=Oryza sativa Japonica Group RepID=B9F2S6_ORYSJ 2.0e-11
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RNA polymerase IV subunit 2.274e-09
Internal
sp_v3.0_unigene55088 SustainPine v3.0 220
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7UBN7_VITVI 1.0e-14
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RNA polymerase IV subunit 2.438e-09
Internal
sp_v3.0_unigene93878 SustainPine v3.0 1057
AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RGA8_RICCO 6.0e-22
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene94004 SustainPine v3.0 1303
AutoFact: Atrophin-1 domain containing protein 4.0e-05
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene94714 SustainPine v3.0 1654
AutoFact: DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3] gb|EAY23572.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3] 5.0e-21
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene97456 SustainPine v3.0 588
AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RGA8_RICCO 5.0e-25
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene105032 SustainPine v3.0 422
AutoFact: DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9GM06_POPTR 2.0e-29
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 1.94e-11
Internal
sp_v3.0_unigene107689 SustainPine v3.0 510
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7UBN7_VITVI 3.0e-11
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene208706 SustainPine v3.0 319
AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RGA8_RICCO 3.0e-07
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain