Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.

Source: Description from FL-Next

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene66452 SustainPine v3.0 304
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula] 2.0e-17
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
C-terminus
sp_v3.0_unigene66511 SustainPine v3.0 263
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Orobanche cernua var. cumana RepID=Q27U10_OROCE 1.0e-22
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 0.0
Internal
sp_v3.0_unigene66804 SustainPine v3.0 371
• AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR 1.0e-18
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Integrase 9.429e-08
Putative Complete
sp_v3.0_unigene66939 SustainPine v3.0 151
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Cycas revoluta RepID=Q56GG4_CYCRE 2.0e-16
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 0.0
Internal
sp_v3.0_unigene67229 SustainPine v3.0 293
• AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 6.0e-27
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 5.22e-09
Putative N-terminus
sp_v3.0_unigene67360 SustainPine v3.0 329
• AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 7.0e-23
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative Complete
sp_v3.0_unigene67452 SustainPine v3.0 378
• AutoFact: Reverse transcriptase (Fragment) n=7 Tax=Prunus mume RepID=C8C9R0_PRUMU 6.0e-38
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 0.0
Putative C-terminus
sp_v3.0_unigene67587 SustainPine v3.0 335
• AutoFact: ORF333 n=1 Tax=Vitis vinifera RepID=B6VJW0_VITVI 4.0e-35
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.39114e-43
N-terminus
sp_v3.0_unigene67804 SustainPine v3.0 175
• AutoFact: Gag-pol polyprotein n=1 Tax=Solanum lycopersicum RepID=E6Y5Q2_SOLLC 5.0e-18
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 0.0
Putative C-terminus
sp_v3.0_unigene67911 SustainPine v3.0 372
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6UUH7_ORYSJ 3.0e-29
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.13e-34
N-terminus
sp_v3.0_unigene68075 SustainPine v3.0 301
• AutoFact: RVT_1 domain containing protein 4.0e-08
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Internal
sp_v3.0_unigene68582 SustainPine v3.0 342
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 2.0e-14
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene69025 SustainPine v3.0 314
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein n=1 Tax=Medicago truncatula RepID=Q2HW87_MEDTR 3.0e-20
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 5.26e-31
Putative N-terminus
sp_v3.0_unigene69477 SustainPine v3.0 218
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q60ET2_ORYSJ 2.0e-18
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Gag-Pol polyprotein 5.658e-13
C-terminus
sp_v3.0_unigene69601 SustainPine v3.0 236
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q94GJ7_ORYSJ 1.0e-13
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 6.1e-07
Putative N-terminus
sp_v3.0_unigene69666 SustainPine v3.0 268
• AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD5_SILLA 2.0e-17
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 1.12e-12
Putative C-terminus
sp_v3.0_unigene69847 SustainPine v3.0 385
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Brassica napus RepID=Q8W452_BRANA 3.0e-33
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.343e-29
C-terminus
sp_v3.0_unigene69854 SustainPine v3.0 492
• AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 5.0e-19
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
C-terminus
sp_v3.0_unigene69905 SustainPine v3.0 296
• AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 3.0e-22
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 8.513e-18
N-terminus
sp_v3.0_unigene69906 SustainPine v3.0 307
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 6.0e-21
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative N-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain