Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).

Source: Description from FL-Next


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene58617 SustainPine v3.0 381
AutoFact: retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] gb|ABA91624.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] 1.0e-11
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
C-terminus
sp_v3.0_unigene58830 SustainPine v3.0 392
AutoFact: Unassigned protein 6.0e-22
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Internal
sp_v3.0_unigene58861 SustainPine v3.0 222
AutoFact: Integrase n=1 Tax=Cucumis melo subsp. melo RepID=A6YTD9_CUCME 1.0e-08
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Internal
sp_v3.0_unigene58892 SustainPine v3.0 256
AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10KL1_ORYSJ 1.0e-16
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Internal
sp_v3.0_unigene58989 SustainPine v3.0 369
AutoFact: GK15001 gene product from transcript GK15001-RA 5.0e-05
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Internal
sp_v3.0_unigene59003 SustainPine v3.0 197
AutoFact: Polyprotein-like n=1 Tax=Solanum chilense RepID=Q9AU17_SOLCI 5.0e-11
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Internal
sp_v3.0_unigene59044 SustainPine v3.0 242
AutoFact: OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa RepID=Q7XTU6_ORYSA 1.0e-13
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Internal
sp_v3.0_unigene59083 SustainPine v3.0 167
AutoFact: PREDICTED: copia protein-like n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI0001DE983F 3.0e-06
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Internal
sp_v3.0_unigene59256 SustainPine v3.0 198
AutoFact: Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Nicotiana tabacum RepID=POLX_TOBAC 1.0e-09
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Putative N-terminus
sp_v3.0_unigene59320 SustainPine v3.0 276
AutoFact: Unassigned protein
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Sma3: Retrotransposon Tto1 DNA 4.873e-06
C-terminus
sp_v3.0_unigene59462 SustainPine v3.0 385
AutoFact: RVT_2 domain containing protein 5.0e-12
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Internal
sp_v3.0_unigene59600 SustainPine v3.0 353
AutoFact: Unassigned protein
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Internal
sp_v3.0_unigene59607 SustainPine v3.0 195
AutoFact: Putative Zea mays retrotransposon Opie-2 n=2 Tax=Oryza sativa Japonica Group RepID=Q8H7T1_ORYSJ 1.0e-10
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
C-terminus
sp_v3.0_unigene59621 SustainPine v3.0 157
AutoFact: PREDICTED: similar to copia-type polyprotein, putative n=1 Tax=Nasonia vitripennis RepID=UPI00015B481A 1.0e-06
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Internal
sp_v3.0_unigene59730 SustainPine v3.0 239
AutoFact: Putative gag-pol polyprotein (Fragment) n=1 Tax=Picea abies RepID=B2KZG9_PICAB 1.0e-09
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Internal
sp_v3.0_unigene59740 SustainPine v3.0 221
AutoFact: Copia-type polyprotein n=1 Tax=Glycine max RepID=C0JJI2_SOYBN 5.0e-10
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Putative C-terminus
sp_v3.0_unigene59801 SustainPine v3.0 274
AutoFact: Putative gag-pol polyprotein (Fragment) n=1 Tax=Picea abies RepID=B2KZG9_PICAB 1.0e-18
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Putative C-terminus
sp_v3.0_unigene59897 SustainPine v3.0 303
AutoFact: Gag-Pol n=1 Tax=Ipomoea batatas RepID=Q6BCY1_IPOBA 3.0e-12
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Internal
sp_v3.0_unigene59909 SustainPine v3.0 410
AutoFact: Putative integrase n=1 Tax=Oryza sativa Japonica Group RepID=Q75M81_ORYSJ 3.0e-09
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
C-terminus
sp_v3.0_unigene59991 SustainPine v3.0 189
AutoFact: Putative gag-pol polyprotein (Fragment) n=1 Tax=Picea abies RepID=B2KZG9_PICAB 3.0e-12
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain