Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: sp=Probable NOT transcription complex subunit VIP2; Arabidopsis thaliana (Mouse-ear cress).

Source: Description from FL-Next

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene136 SustainPine v3.0 2807
• AutoFact: RecName: Full=Probable NOT transcription complex subunit VIP2; AltName: Full=Protein VIRE2 INTERACTING PROTEIN2; Short=NbVIP2 gb|AAY15746.1| VIP2 [Nicotiana benthamiana] 0.0
• FL-Next: sp=Probable NOT transcription complex subunit VIP2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: NOT2/NOT3/NOT5 family protein, expressed 4.49e-09
Complete
sp_v3.0_unigene2595 SustainPine v3.0 2946
• AutoFact: CCR4-NOT transcription complex subunit 2 [Arabidopsis thaliana] gb|AEE28167.1| CCR4-NOT transcription complex subunit 2 [Arabidopsis thaliana] 0.0
• FL-Next: sp=Probable NOT transcription complex subunit VIP2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: NOT2/NOT3/NOT5 family protein, expressed 4.045e-09
Complete
sp_v3.0_unigene4449 SustainPine v3.0 2587
• AutoFact: Not CCR4-Not complex component, N-terminal; tRNA-binding arm [Medicago truncatula] 0.0
• FL-Next: sp=Probable NOT transcription complex subunit VIP2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Not1 N-terminal domain, CCR4-Not complex component family protein, expressed 3.392e-09
Putative Complete
sp_v3.0_unigene12281 SustainPine v3.0 803
• AutoFact: CCR4-NOT transcription complex subunit 2 [Arabidopsis thaliana] gb|AEE28167.1| CCR4-NOT transcription complex subunit 2 [Arabidopsis thaliana] 3.0e-29
• FL-Next: sp=Probable NOT transcription complex subunit VIP2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: NOT2/NOT3/NOT5 family protein, expressed 6.299e-10
N-terminus
sp_v3.0_unigene53646 SustainPine v3.0 471
• AutoFact: CCR4-NOT transcription complex subunit 2 [Arabidopsis thaliana] gb|AEE28167.1| CCR4-NOT transcription complex subunit 2 [Arabidopsis thaliana] 4.0e-09
• FL-Next: sp=Probable NOT transcription complex subunit VIP2; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene58384 SustainPine v3.0 419
• AutoFact: CCR4-NOT transcription complex subunit, putative n=1 Tax=Ricinus communis RepID=B9SW63_RICCO 9.0e-18
• FL-Next: sp=Probable NOT transcription complex subunit VIP2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene58391 SustainPine v3.0 345
• AutoFact: CCR4-NOT transcription complex subunit 2 [Arabidopsis thaliana] gb|AEE28167.1| CCR4-NOT transcription complex subunit 2 [Arabidopsis thaliana] 9.0e-15
• FL-Next: sp=Probable NOT transcription complex subunit VIP2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Os02g0782200 protein 6.335e-06
N-terminus
sp_v3.0_unigene70274 SustainPine v3.0 312
• AutoFact: CCR4-NOT transcription complex subunit, putative n=1 Tax=Ricinus communis RepID=B9SW63_RICCO 2.0e-15
• FL-Next: sp=Probable NOT transcription complex subunit VIP2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene99373 SustainPine v3.0 456
• AutoFact: CCR4-NOT transcription complex subunit, putative n=1 Tax=Ricinus communis RepID=B9SW63_RICCO 2.0e-16
• FL-Next: sp=Probable NOT transcription complex subunit VIP2; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene153615 SustainPine v3.0 378
• AutoFact: NOT2/NOT3/NOT5 family protein [Dictyostelium discoideum AX4] gb|EAL71462.1| NOT2/NOT3/NOT5 family protein [Dictyostelium discoideum AX4] 2.0e-26
• FL-Next: sp=Probable NOT transcription complex subunit VIP2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Not1 N-terminal domain, CCR4-Not complex component family protein, expressed 2.848e-09
C-terminus
sp_v3.0_unigene158790 SustainPine v3.0 281
• AutoFact: CCR4-NOT transcription complex subunit 3 n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9C6J8_9EUKA 2.0e-29
• FL-Next: sp=Probable NOT transcription complex subunit VIP2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Not1 N-terminal domain, CCR4-Not complex component family protein, expressed 2.304e-09
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain