Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress).

Source: Description from FL-Next


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene9121 SustainPine v3.0 1933
AutoFact: DNA topoisomerase 1 beta [Arabidopsis thaliana] dbj|BAB08548.1| DNA topoisomerase I [Arabidopsis thaliana] dbj|BAE98926.1| DNA topoisomerase I like protein [Arabidopsis thaliana] gb|AED96615.1| DNA topoisomerase 1 beta [Arabidopsis thaliana] 0.0
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Topoisomerase I 4.127e-25
C-terminus
sp_v3.0_unigene19456 SustainPine v3.0 2550
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TE60_VITVI 1.4013e-45
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene22182 SustainPine v3.0 641
AutoFact: DNA topoisomerase I [Arabidopsis thaliana] 9.0e-08
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene77106 SustainPine v3.0 208
AutoFact: Topoisomerase I n=1 Tax=Pisum sativum RepID=O24307_PEA 7.0e-26
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Topoisomerase I 2.348e-21
Putative C-terminus
sp_v3.0_unigene157868 SustainPine v3.0 345
AutoFact: Similar to uniprot|P04786 Saccharomyces cerevisiae YOL006c TOP1 DNA topoisomerase I n=1 Tax=Candida glabrata CBS 138 RepID=Q6FNH4_CANGA 2.0e-18
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene166550 SustainPine v3.0 447
AutoFact: putative DNA topoisomerase I [Arabidopsis thaliana] 3.0e-08
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain