Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v2.0

Name: rna binding

Source: Description from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene3986 SustainPine v2.0 2484
AutoFact: nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] dbj|BAB10647.1| unnamed protein product [Arabidopsis thaliana] gb|AAL32982.1| AT5g60980/MSL3_100 [Arabidopsis thaliana] gb|AAO23575.1| At5g60980/MSL3_100 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v2.0_unigene4282 SustainPine v2.0 537
AutoFact: PREDICTED: similar to RNA recognition motif (RRM)-containing protein n=1 Tax=Vitis vinifera RepID=UPI000198579B 3.0e-34
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: rna binding 2.8026e-45
Internal
sp_v2.0_unigene5120 SustainPine v2.0 2512
AutoFact: putative Ras-GTPase-activating protein binding protein 1 [Oryza sativa Japonica Group] dbj|BAG91794.1| unnamed protein product [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v2.0_unigene6408 SustainPine v2.0 2083
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3Y1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v2.0_unigene7676 SustainPine v2.0 2619
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAM10328.1| At2g44720/F16B22.21 [Arabidopsis thaliana] gb|AAN18203.1| At2g44720/F16B22.21 [Arabidopsis thaliana] gb|AEC10458.1| RNA recognition motif-containing protein [Arabidopsis thalia 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v2.0_unigene10037 SustainPine v2.0 2542
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Putative Complete
sp_v2.0_unigene13757 SustainPine v2.0 1101
AutoFact: RNA-binding protein-like [Oryza sativa Japonica Group] gb|EEE69405.1| hypothetical protein OsJ_28765 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
C-terminus
sp_v2.0_unigene14579 SustainPine v2.0 3563
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SP17_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v2.0_unigene15537 SustainPine v2.0 3510
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v2.0_unigene16420 SustainPine v2.0 1999
AutoFact: RNA recognition water-stress protein1 [Zea mays] gb|AAN04093.1| water-stress protein [Zea mays] 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v2.0_unigene18696 SustainPine v2.0 727
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RLM4_RICCO 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Putative N-terminus
sp_v2.0_unigene19161 SustainPine v2.0 407
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 0.0
FL-Next: sp=Putative pumilio homolog 8, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna binding 0.0
Internal
sp_v2.0_unigene20344 SustainPine v2.0 876
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9R8T5_RICCO 1.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v2.0_unigene21245 SustainPine v2.0 2491
AutoFact: Unassigned protein
FL-Next: sp=Zinc finger CCCH domain-containing protein 18; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna binding 0.0
Complete
sp_v2.0_unigene21531 SustainPine v2.0 746
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 6.64496e-42
C-terminus
sp_v2.0_unigene29482 SustainPine v2.0 429
AutoFact: Plant Tudor-like RNA-binding protein [Arabidopsis thaliana] gb|AAM62492.1| unknown [Arabidopsis thaliana] gb|AAO24570.1| At5g20030 [Arabidopsis thaliana] gb|AED92781.1| Plant Tudor-like RNA-binding protein [Arabidopsis thaliana] 5.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 6.92412e-16
C-terminus
sp_v2.0_unigene29521 SustainPine v2.0 379
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 3.56513e-22
Putative N-terminus
sp_v2.0_unigene34190 SustainPine v2.0 2005
AutoFact: RNA recognition water-stress protein1 [Zea mays] gb|AAN04093.1| water-stress protein [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v2.0_unigene34542 SustainPine v2.0 405
AutoFact: pfam03735, ENT, ENT domain 3.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 1.76468e-12
C-terminus
sp_v2.0_unigene35414 SustainPine v2.0 1062
AutoFact: nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] gb|AED97406.1| nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] 5.04467e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
N-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain