Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v2.0

Name: production of siRNA involved in RNA interference

Term: GO:0030422  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene3729 SustainPine v2.0 1228
• AutoFact: SNF2 and helicase domain-containing protein [Arabidopsis thaliana] gb|AAD22300.1| hypothetical protein [Arabidopsis thaliana] gb|AEC06492.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana] 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: snf2 family dna-dependent atpase 1.72025e-30
Putative C-terminus
sp_v2.0_unigene22893 SustainPine v2.0 654
• AutoFact: RNA methylase HUA ENHANCER 1 [Arabidopsis thaliana] ref|NP_001190782.1| RNA methylase HUA ENHANCER 1 [Arabidopsis thaliana] sp|Q9C5Q8.1|HEN1_ARATH RecName: Full=Small RNA 2'-O-methyltransferase; AltName: Full=Protein CORYMBOSA 2; AltName: Full=Protein HUA 2.0e-18
• FL-Next: sp=Small RNA 2'-O-methyltransferase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna methylase hua enhancer 1 8.36715e-42
C-terminus
sp_v2.0_unigene26759 SustainPine v2.0 673
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum RepID=Q1L6V6_SOLLC 3.0e-36
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
• Blast2go: nuclear rna polymerase d2a 1.27412e-40
Internal
sp_v2.0_unigene31255 SustainPine v2.0 641
• AutoFact: RNA methylase HUA ENHANCER 1 [Arabidopsis thaliana] ref|NP_001190782.1| RNA methylase HUA ENHANCER 1 [Arabidopsis thaliana] sp|Q9C5Q8.1|HEN1_ARATH RecName: Full=Small RNA 2'-O-methyltransferase; AltName: Full=Protein CORYMBOSA 2; AltName: Full=Protein HUA 7.00649e-44
• FL-Next: sp=Small RNA 2'-O-methyltransferase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: small rna 2 -o-methyltransferase-like 0.0
Internal
sp_v2.0_unigene31847 SustainPine v2.0 434
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RGA8_RICCO 3.0e-25
• FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna-directed rna 8.46086e-29
N-terminus
sp_v2.0_unigene36681 SustainPine v2.0 546
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RGA8_RICCO 2.0e-22
• FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: the plant-specific rna polymerase iv largest subunit-like protein 3.12698e-22
Internal
sp_v2.0_unigene38424 SustainPine v2.0 581
• AutoFact: RNA-dependent RNA polymerase 2 [Arabidopsis thaliana] sp|O82504.1|RDR2_ARATH RecName: Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2; AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 1; AltName: Full=RNA-directed RNA polymerase 2 gb|AAC35535.1| simi 8.0e-20
• FL-Next: sp=RNA-dependent RNA polymerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna-dependent rna polymerase 2 5.57959e-27
Internal
sp_v2.0_unigene39714 SustainPine v2.0 334
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum RepID=Q1L6V6_SOLLC 3.0e-27
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
• Blast2go: nuclear rna polymerase d2a 1.18154e-31
Internal
sp_v2.0_unigene39785 SustainPine v2.0 496
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9GM06_POPTR 2.0e-39
• FL-Next: sp=DNA-directed RNA polymerase; Pinus monophylla. Plastid; Chloroplast. 0.0
• Blast2go: rna polymerase iv subunit 5.60519e-45
Internal
sp_v2.0_unigene41675 SustainPine v2.0 853
• AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 0.0
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: protein argonaute 4 0.0
Internal
sp_v2.0_unigene43468 SustainPine v2.0 423
• AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9SC13_RICCO 4.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dicer-like protein 4 1.54766e-33
Internal
sp_v2.0_unigene57092 SustainPine v2.0 167
• AutoFact: Defective in RNA-directed DNA methylation 1 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L1V4_ARALL 7.0e-12
• FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: defective in rna-directed dna methylation 1 1.13327e-14
Internal
sp_v2.0_unigene61451 SustainPine v2.0 362
• AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 0.0
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: argonaute protein group 0.0
Internal
sp_v2.0_unigene70212 SustainPine v2.0 473
• AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7UBN7_VITVI 1.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein dcl 9.9569e-19
C-terminus
sp_v2.0_unigene72549 SustainPine v2.0 338
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RC12_RICCO 1.0e-10
• FL-Next: sp=DNA-directed RNA polymerase D subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: nuclear rna polymerase d1a 8.85785e-12
Putative N-terminus
sp_v2.0_unigene76325 SustainPine v2.0 350
• AutoFact: Small RNA 2'-O-methyltransferase n=3 Tax=Camelineae RepID=HEN1_ARATH 7.0e-07
• FL-Next: sp=Small RNA 2'-O-methyltransferase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna methylase hua enhancer 1 3.64119e-09
N-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain