Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: chromatin remodeling complex

Term: GO:0016585  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene1800 SustainPine v2.0 1080
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein 0.0
Complete
sp_v2.0_unigene4221 SustainPine v2.0 1032
AutoFact: ATP-dependent helicase BRM n=6 Tax=Camelineae RepID=BRM_ARATH 0.0
FL-Next: Isoform 2 of ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM 0.0
Blast2go: atp-dependent helicase brm 0.0
Internal
sp_v2.0_unigene5575 SustainPine v2.0 1527
AutoFact: Nucleosome remodeling factor, p48 subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJC1_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleosome chromatin assembly factor group 0.0
Putative Complete
sp_v2.0_unigene8043 SustainPine v2.0 1873
AutoFact: WD-40 repeat-containing protein MSI1 n=8 Tax=core eudicotyledons RepID=MSI1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: multicopy suppressor of ira1 0.0
Complete
sp_v2.0_unigene8756 SustainPine v2.0 3811
AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent helicase brm-like 0.0
Putative Complete
sp_v2.0_unigene14584 SustainPine v2.0 2094
AutoFact: Nucleosome/chromatin assembly factor group n=7 Tax=core eudicotyledons RepID=A9PHH9_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: multicopy suppressor of ira1 0.0
Complete
sp_v2.0_unigene20381 SustainPine v2.0 858
AutoFact: Actin related protein n=1 Tax=Populus trichocarpa RepID=B9IMW6_POPTR 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: actin-related protein 6 2.8125e-36
C-terminus
sp_v2.0_unigene27286 SustainPine v2.0 431
AutoFact: Helicase, putative n=1 Tax=Ricinus communis RepID=B9SBN6_RICCO 6.0e-17
FL-Next: tr=Helicase, putative; Ricinus communis (Castor bean). 0.0
Blast2go: swr1 complex snf2 family dna-dependent atpase 4.13539e-19
Internal
sp_v2.0_unigene29580 SustainPine v2.0 959
AutoFact: actin-related protein 6 [Olimarabidopsis pumila] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: actin-related protein 6 0.0
N-terminus
sp_v2.0_unigene31079 SustainPine v2.0 277
AutoFact: putative actin protein [Arabidopsis thaliana] 7.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: actin-related protein 6 3.74921e-31
Putative N-terminus
sp_v2.0_unigene33795 SustainPine v2.0 669
AutoFact: Actin related protein n=1 Tax=Populus trichocarpa RepID=B9IMW6_POPTR 6.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: actin-related protein 6 3.17408e-36
C-terminus
sp_v2.0_unigene34814 SustainPine v2.0 1268
AutoFact: MSI type nucleosome/chromatin assembly factor C [Zea mays] gb|AAL33648.1|AF440219_1 MSI type nucleosome/chromatin assembly factor C [Zea mays] gb|ACN33308.1| unknown [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleosome chromatin assembly factor group 0.0
Complete
sp_v2.0_unigene35289 SustainPine v2.0 622
AutoFact: ATP-dependent helicase BRM [Arabidopsis thaliana] sp|Q6EVK6.1|BRM_ARATH RecName: Full=ATP-dependent helicase BRM; Short=AtBRM; AltName: Full=Protein BRAHMA emb|CAG28313.1| putative SNF2 subfamily ATPase [Arabidopsis thaliana] gb|AEC10632.1| ATP-dependent 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent helicase brm 0.0
N-terminus
sp_v2.0_unigene36874 SustainPine v2.0 888
AutoFact: Helicase, putative n=1 Tax=Ricinus communis RepID=B9SBN6_RICCO 0.0
FL-Next: sp=Probable chromatin-remodeling complex ATPase chain; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: swr1 complex snf2 family dna-dependent atpase 0.0
Internal
sp_v2.0_unigene41249 SustainPine v2.0 196
AutoFact: SWR1 complex protein, SNF2 family DNA-dependent ATPase (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U2Y8_PHYPA 1.0e-30
FL-Next: sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: swr1 complex snf2 family dna-dependent atpase 2.22626e-36
Internal
sp_v2.0_unigene42419 SustainPine v2.0 277
AutoFact: PREDICTED: similar to PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding / helicase n=1 Tax=Vitis vinifera RepID=UPI0001983E18 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: swr1 complex snf2 family dna-dependent atpase 1.49893e-29
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain