Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: poly(A)+ mRNA export from nucleus

Term: GO:0016973  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene1421 SustainPine v2.0 2027
• AutoFact: DEAD-box ATP-dependent RNA helicase 38 [Arabidopsis thaliana] sp|Q93ZG7.2|RH38_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 38; AltName: Full=Low expression of osmotically-responsive genes 4 protein; AltName: Full=Protein CRYOPHYTE emb|CAB64214 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 38-like 0.0
Complete
sp_v2.0_unigene2322 SustainPine v2.0 1811
• AutoFact: proteasome-like protein [Arabidopsis thaliana] dbj|BAC43481.1| unknown protein [Arabidopsis thaliana] gb|AEC06895.1| proteasome-like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v2.0_unigene4334 SustainPine v2.0 1660
• AutoFact: nucleoprotein TPR [Arabidopsis thaliana] sp|A4GSN8.1|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb|ABO21684.1| nuclear-pore anchor [Arabidopsis thaliana] gb|AEE36226.1| nucleoprotein TPR [A 5.99994e-41
• FL-Next: sp=Nuclear-pore anchor; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: nucleoprotein tpr 0.0
Internal
sp_v2.0_unigene4805 SustainPine v2.0 500
• AutoFact: Nucleoporin GLE1, putative n=1 Tax=Ricinus communis RepID=B9RMT7_RICCO 2.0e-16
• FL-Next: tr=Nucleoporin GLE1, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: gle1l protein 3.50236e-16
Internal
sp_v2.0_unigene6994 SustainPine v2.0 1474
• AutoFact: uncharacterized protein [Arabidopsis thaliana] gb|AAK55696.1|AF378893_1 AT5g02770/F9G14_80 [Arabidopsis thaliana] emb|CAB86031.1| putative protein [Arabidopsis thaliana] gb|AAK91488.1| AT5g02770/F9G14_80 [Arabidopsis thaliana] dbj|BAD95440.1| putative pro 4.0e-09
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: protein 2.05244e-12
Complete
sp_v2.0_unigene9236 SustainPine v2.0 851
• AutoFact: nucleoprotein TPR [Arabidopsis thaliana] sp|A4GSN8.1|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb|ABO21684.1| nuclear-pore anchor [Arabidopsis thaliana] gb|AEE36226.1| nucleoprotein TPR [A 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleoprotein tpr 0.0
Complete
sp_v2.0_unigene14742 SustainPine v2.0 1042
• AutoFact: nucleoprotein TPR [Arabidopsis thaliana] sp|A4GSN8.1|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb|ABO21684.1| nuclear-pore anchor [Arabidopsis thaliana] gb|AEE36226.1| nucleoprotein TPR [A 0.0
• FL-Next: sp=Nuclear-pore anchor; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: nucleoprotein tpr 0.0
Internal
sp_v2.0_unigene16637 SustainPine v2.0 2248
• AutoFact: DUF2074 domain containing protein 5.0e-05
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: protein 2.81442e-18
Putative Complete
sp_v2.0_unigene34677 SustainPine v2.0 783
• AutoFact: DEAD-box ATP-dependent RNA helicase 38 [Arabidopsis thaliana] sp|Q93ZG7.2|RH38_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 38; AltName: Full=Low expression of osmotically-responsive genes 4 protein; AltName: Full=Protein CRYOPHYTE emb|CAB64214 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 38-like 0.0
Putative N-terminus
sp_v2.0_unigene39046 SustainPine v2.0 567
• AutoFact: nucleoprotein TPR [Arabidopsis thaliana] sp|A4GSN8.1|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb|ABO21684.1| nuclear-pore anchor [Arabidopsis thaliana] gb|AEE36226.1| nucleoprotein TPR [A 2.0e-19
• FL-Next: sp=Nuclear-pore anchor; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: nucleoprotein tpr 7.22623e-32
N-terminus
sp_v2.0_unigene43201 SustainPine v2.0 325
• AutoFact: nucleoprotein TPR [Arabidopsis thaliana] sp|A4GSN8.1|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb|ABO21684.1| nuclear-pore anchor [Arabidopsis thaliana] gb|AEE36226.1| nucleoprotein TPR [A 2.0e-15
• FL-Next: sp=Nuclear-pore anchor; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: nucleoprotein tpr 2.59187e-17
Internal
sp_v2.0_unigene58534 SustainPine v2.0 274
• AutoFact: nucleoprotein TPR [Arabidopsis thaliana] sp|A4GSN8.1|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb|ABO21684.1| nuclear-pore anchor [Arabidopsis thaliana] gb|AEE36226.1| nucleoprotein TPR [A 1.0e-10
• FL-Next: sp=Nuclear-pore anchor; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: nucleoprotein tpr 4.30886e-18
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain