Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: cytosolic large ribosomal subunit

Term: GO:0022625  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene61341 SustainPine v2.0 1334
AutoFact: large subunit ribosomal protein L24e [Arabidopsis thaliana] ref|NP_001078059.1| large subunit ribosomal protein L24e [Arabidopsis thaliana] sp|O22165.1|RLP24_ARATH RecName: Full=Probable ribosome biogenesis protein RLP24 gb|AAC31838.1| 60S ribosomal prote 6.00036e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: large subunit ribosomal protein l24e 0.0
Complete
sp_v2.0_unigene61418 SustainPine v2.0 777
AutoFact: 60S ribosomal protein L34-1 n=28 Tax=Magnoliophyta RepID=RL341_ARATH 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l34 3.0623e-40
Complete
sp_v2.0_unigene61432 SustainPine v2.0 684
AutoFact: PREDICTED: similar to RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome isoform 2 n=1 Tax=Vitis vinifera RepID=UPI000198595A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l18a 0.0
Complete
sp_v2.0_unigene62337 SustainPine v2.0 1071
AutoFact: large subunit ribosomal protein L24e [Arabidopsis thaliana] ref|NP_001078059.1| large subunit ribosomal protein L24e [Arabidopsis thaliana] sp|O22165.1|RLP24_ARATH RecName: Full=Probable ribosome biogenesis protein RLP24 gb|AAC31838.1| 60S ribosomal prote 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: large subunit ribosomal protein l24e 0.0
Complete
sp_v2.0_unigene65286 SustainPine v2.0 497
AutoFact: RecName: Full=60S ribosomal protein L24 gb|AAG13986.1|AF298827_1 60S ribosomal protein L24 [Prunus avium] 4.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 5.60519e-45
N-terminus
sp_v2.0_unigene68588 SustainPine v2.0 389
AutoFact: ribosomal protein L3 [Hyacinthus orientalis] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l3-like 0.0
Internal
sp_v2.0_unigene69316 SustainPine v2.0 426
AutoFact: 60S ribosomal protein L18-3 [Arabidopsis thaliana] sp|Q940B0.1|RL183_ARATH RecName: Full=60S ribosomal protein L18-3 gb|AAL07220.1| putative 60S ribosomal protein [Arabidopsis thaliana] gb|AAM67529.1| putative 60S ribosomal protein [Arabidopsis thaliana] 3.00018e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l18-3-like 0.0
Putative C-terminus
sp_v2.0_unigene70316 SustainPine v2.0 424
AutoFact: 60S ribosomal protein L11-1 n=51 Tax=Embryophyta RepID=RL111_ARATH 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l11 1.23851e-25
C-terminus
sp_v2.0_unigene74921 SustainPine v2.0 212
AutoFact: 60S ribosomal protein L17 [Picea mariana] 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l23 1.19545e-19
Misassembled
sp_v2.0_unigene78551 SustainPine v2.0 809
AutoFact: L3 Ribosomal protein n=1 Tax=Medicago sativa subsp. x varia RepID=Q9SBR8_MEDSV 5.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l3-1 0.0
Internal
sp_v2.0_unigene78587 SustainPine v2.0 674
AutoFact: 60S ribosomal protein L12 [Capsicum annuum] 4.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l12 6.85346e-26
C-terminus
sp_v2.0_unigene79472 SustainPine v2.0 694
AutoFact: Ribosomal protein L5, putative n=1 Tax=Ricinus communis RepID=B9SEY9_RICCO 6.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal protein 1.90149e-09
N-terminus
sp_v2.0_unigene79482 SustainPine v2.0 503
AutoFact: 60S ribosomal protein l12 [Oryza sativa Indica Group] 3.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l12 4.06924e-22
Putative Complete
sp_v2.0_unigene80066 SustainPine v2.0 660
AutoFact: Ribosomal protein L30 [Medicago truncatula] 6.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l7 3.50904e-32
C-terminus
sp_v2.0_unigene80559 SustainPine v2.0 764
AutoFact: 60S ribosomal protein L35-4 n=1 Tax=Arabidopsis thaliana RepID=F4KDR2_ARATH 8.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l35 2.09849e-32
Complete
sp_v2.0_unigene80854 SustainPine v2.0 427
AutoFact: 60S ribosomal protein L3-1 n=7 Tax=Brassicaceae RepID=RL31_ARATH 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l3-1 1.87644e-30
Internal
sp_v2.0_unigene80992 SustainPine v2.0 460
AutoFact: 60S ribosomal protein L35a-1 n=16 Tax=rosids RepID=R35A1_ARATH 1.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l35a 0.0
Putative Complete
sp_v2.0_unigene81031 SustainPine v2.0 231
AutoFact: RecName: Full=60S ribosomal protein L4; AltName: Full=L1 gb|AAD32206.1|AF134732_1 60S ribosomal protein L1 [Prunus armeniaca] 2.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l4-1 1.54804e-17
Internal
sp_v2.0_unigene81130 SustainPine v2.0 755
AutoFact: 60S ribosomal protein L11-1 n=51 Tax=Embryophyta RepID=RL111_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l11 0.0
C-terminus
sp_v2.0_unigene81699 SustainPine v2.0 523
AutoFact: 60S ribosomal protein L3-1 n=7 Tax=Brassicaceae RepID=RL31_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l3-1 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain