Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v2.0

Name: DNA mediated transformation

Term: GO:0009294  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene401 SustainPine v2.0 1981
AutoFact: Chromatin remodeling complex subunit (Fragment) n=1 Tax=Populus trichocarpa RepID=B9MYK9_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: swi snf-related matrix-associated actin-dependent regulator of chromatin subfamily a member 3-like 2-like 0.0
Putative Complete
sp_v2.0_unigene873 SustainPine v2.0 3403
AutoFact: Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SGL2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: global transcription factor group e4 0.0
Complete
sp_v2.0_unigene1356 SustainPine v2.0 1197
AutoFact: SET domain-containing protein (Fragment) n=2 Tax=Populus trichocarpa RepID=B9HSV4_POPTR 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone-lysine n- h3 lysine-9 specific suvh9 5.13925e-32
Putative C-terminus
sp_v2.0_unigene1513 SustainPine v2.0 2134
AutoFact: Elongator complex protein 3 n=16 Tax=Magnoliophyta RepID=ELP3_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone acetyltransferase 0.0
Complete
sp_v2.0_unigene1881 SustainPine v2.0 1980
AutoFact: Histone deacetylase (Fragment) n=2 Tax=Malpighiales RepID=B9IEX4_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
Complete
sp_v2.0_unigene2161 SustainPine v2.0 3454
AutoFact: Cellulose synthase-like A1 n=2 Tax=Pinaceae RepID=A3QT94_PINTA 0.0
FL-Next: tr=Cellulose synthase-like A1; Pinus taeda (Loblolly pine). 0.0
Blast2go: glucomannan 4-beta-mannosyltransferase 9-like 0.0
Complete
sp_v2.0_unigene2300 SustainPine v2.0 1702
AutoFact: Cellulose synthase-like A2 n=1 Tax=Pinus taeda RepID=A3QT95_PINTA 0.0
FL-Next: tr=Cellulose synthase-like A2; Pinus taeda (Loblolly pine). 0.0
Blast2go: glucomannan 4-beta-mannosyltransferase 9-like 0.0
C-terminus
sp_v2.0_unigene2331 SustainPine v2.0 1373
AutoFact: Transcription initiation factor TFIID, subunit TAF1 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TKZ9_PHYPA 0.0
FL-Next: sp=Transcription initiation factor TFIID subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: transcription initiation factor subunit taf1 0.0
Internal
sp_v2.0_unigene2752 SustainPine v2.0 691
AutoFact: transcription cofactor, putative; K04498 E1A/CREB-binding protein [EC:2.3.1.48] 7.9874e-44
FL-Next: sp=Histone acetyltransferase HAC1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: histone acetyltransferase 0.0
C-terminus
sp_v2.0_unigene2926 SustainPine v2.0 3231
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Complete
sp_v2.0_unigene3833 SustainPine v2.0 675
AutoFact: Transcription cofactor, putative n=1 Tax=Ricinus communis RepID=B9RHR9_RICCO 1.96182e-44
FL-Next: sp=Histone acetyltransferase HAC1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: histone acetyltransferase 0.0
C-terminus
sp_v2.0_unigene5014 SustainPine v2.0 473
AutoFact: DNA repair helicase rad5,16, putative n=1 Tax=Ricinus communis RepID=B9SN70_RICCO 1.99993e-41
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair helicase 0.0
Internal
sp_v2.0_unigene6345 SustainPine v2.0 734
AutoFact: Histone deacetylase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TG19_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
Internal
sp_v2.0_unigene7570 SustainPine v2.0 3245
AutoFact: Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SGL2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: global transcription factor group e4 0.0
Complete
sp_v2.0_unigene12168 SustainPine v2.0 707
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_54.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SRS4_VITVI 0.0
FL-Next: Isoform 2 of Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 0.0
Blast2go: histone acetyltransferase 0.0
Internal
sp_v2.0_unigene12247 SustainPine v2.0 729
AutoFact: Class II RPD3 type histone deacetylase protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TT63_PHYPA 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 15 7.58608e-12
Putative C-terminus
sp_v2.0_unigene13228 SustainPine v2.0 525
AutoFact: Histone deacetylase RPD3/HDA1 class II n=3 Tax=Triticeae RepID=C1IC96_HORVU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 15-like 0.0
Internal
sp_v2.0_unigene13567 SustainPine v2.0 408
AutoFact: SET domain-containing protein (Fragment) n=2 Tax=Populus trichocarpa RepID=B9HSV4_POPTR 2.0e-12
FL-Next: sp=Histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: histone-lysine n- h3 lysine-9 specific suvh9 4.99668e-14
Internal
sp_v2.0_unigene14842 SustainPine v2.0 761
AutoFact: p300/CBP acetyltransferase-related protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TAD6_PHYPA 2.0e-28
FL-Next: Isoform 2 of Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 0.0
Blast2go: histone acetyltransferase 2.34058e-31
Internal
sp_v2.0_unigene14892 SustainPine v2.0 962
AutoFact: Cytosine-specific methyltransferase n=1 Tax=Daucus carota RepID=O48867_DAUCA 0.0
FL-Next: sp=DNA (cytosine-5)-methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna (cytosine-5)-methyltransferase 1b-like 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain