Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: production of lsiRNA involved in RNA interference

Term: GO:0010599  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene1466 SustainPine v2.0 1172
AutoFact: CAF protein n=17 Tax=Camelineae RepID=Q56Y50_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: endoribonuclease dicer 0.0
Complete
sp_v2.0_unigene5674 SustainPine v2.0 1997
AutoFact: Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9S921_RICCO 0.0
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: protein argonaute 7-like 0.0
C-terminus
sp_v2.0_unigene5835 SustainPine v2.0 2496
AutoFact: DsRNA-specific nuclease dicer and related ribonuclease n=2 Tax=Physcomitrella patens RepID=A9RV91_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: endoribonuclease dicer 0.0
Putative Complete
sp_v2.0_unigene5849 SustainPine v2.0 613
AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: endoribonuclease dicer homolog 1-like 0.0
Internal
sp_v2.0_unigene11861 SustainPine v2.0 1441
AutoFact: Argonaute protein group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HXP0_POPTR 0.0
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: protein argonaute 7-like 0.0
Internal
sp_v2.0_unigene12592 SustainPine v2.0 518
AutoFact: Endoribonuclease Dicer homolog 3b n=2 Tax=Oryza sativa RepID=DCL3B_ORYSJ 6.0e-10
FL-Next: sp=Endoribonuclease Dicer homolog 3b; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: endoribonuclease dicer 4.40811e-11
Putative N-terminus
sp_v2.0_unigene13594 SustainPine v2.0 266
AutoFact: RecName: Full=Endoribonuclease Dicer homolog 4; AltName: Full=Dicer-like protein 4; Short=OsDCL4; AltName: Full=Protein SHOOT ORGANIZATION 1 gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group] 7.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dicer-like protein 4 8.79726e-22
N-terminus
sp_v2.0_unigene14611 SustainPine v2.0 807
AutoFact: Protein argonaute 7 n=3 Tax=Oryza sativa RepID=AGO7_ORYSJ 2.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein argonaute 7-like 2.24208e-44
Complete
sp_v2.0_unigene19522 SustainPine v2.0 362
AutoFact: Dicer-like 4 n=1 Tax=Physcomitrella patens RepID=B3SRQ1_9BRYO 6.0e-12
FL-Next: sp=Dicer-like protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dsrna-specific nuclease dicer and related ribonuclease 6.85019e-14
Internal
sp_v2.0_unigene25310 SustainPine v2.0 2112
AutoFact: CAF protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: endoribonuclease dicer 0.0
C-terminus
sp_v2.0_unigene27583 SustainPine v2.0 1906
AutoFact: RecName: Full=Endoribonuclease Dicer homolog 4; AltName: Full=Dicer-like protein 4; Short=OsDCL4; AltName: Full=Protein SHOOT ORGANIZATION 1 gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dicer-like protein 4 0.0
C-terminus
sp_v2.0_unigene28419 SustainPine v2.0 1042
AutoFact: Endoribonuclease Dicer homolog 1 n=4 Tax=Poaceae RepID=DCL1_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: endoribonuclease dicer homolog 1-like 0.0
Putative Complete
sp_v2.0_unigene32372 SustainPine v2.0 321
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: endoribonuclease dicer 0.0
Internal
sp_v2.0_unigene33719 SustainPine v2.0 897
AutoFact: argonaute-like protein [Arabidopsis thaliana] sp|Q9C793.1|AGO7_ARATH RecName: Full=Protein argonaute 7; AltName: Full=Protein ZIPPY gb|AAG60096.1|AC073178_7 pinhead-like protein [Arabidopsis thaliana] gb|AAQ92355.1| ZIPPY [Arabidopsis thaliana] gb|AEE3492 0.0
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: protein argonaute 7-like 0.0
Internal
sp_v2.0_unigene37971 SustainPine v2.0 304
AutoFact: Isoform 2 of Endoribonuclease Dicer homolog 4 n=1 Tax=Oryza sativa Japonica Group RepID=A7LFZ6-2 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dicer-like protein 1.05491e-38
Internal
sp_v2.0_unigene39790 SustainPine v2.0 507
AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9SC13_RICCO 6.0e-31
FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 0.0
Blast2go: dicer-like protein 3.31938e-36
N-terminus
sp_v2.0_unigene41271 SustainPine v2.0 334
AutoFact: Argonaute protein group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HXP0_POPTR 4.0e-25
FL-Next: sp=Protein argonaute 7; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein argonaute 7-like 3.59372e-30
Internal
sp_v2.0_unigene42131 SustainPine v2.0 486
AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: endoribonuclease dicer homolog 1-like 0.0
Internal
sp_v2.0_unigene43411 SustainPine v2.0 449
AutoFact: dicer-like protein 4 [Arabidopsis thaliana] sp|P84634.2|DCL4_ARATH RecName: Full=Dicer-like protein 4 gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana] gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana] 1.0e-23
FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dicer-like protein 4 2.33489e-34
Internal
sp_v2.0_unigene45297 SustainPine v2.0 373
AutoFact: RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=OsDCL1 gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group] gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: endoribonuclease dicer homolog 1-like 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain