Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Term: GO:0000184  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene3473 SustainPine v2.0 1405
• AutoFact: HIV Tat-specific factor 1 [Arabidopsis thaliana] emb|CAC01867.1| putative protein [Arabidopsis thaliana] gb|AAY25436.1| At5g16260 [Arabidopsis thaliana] dbj|BAF01062.1| hypothetical protein [Arabidopsis thaliana] gb|AED92266.1| HIV Tat-specific factor 1 [ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: hiv tat-specific factor 1 homolog 0.0
N-terminus
sp_v2.0_unigene3617 SustainPine v2.0 1219
• AutoFact: EST1 domain containing protein 8.0e-24
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: telomerase activating protein est1 0.0
N-terminus
sp_v2.0_unigene11808 SustainPine v2.0 723
• AutoFact: putative cytokinin inducibl protein [Oryza sativa Japonica Group] gb|AAQ56472.1| putative cytokinin inducible protein [Oryza sativa Japonica Group] 1.0e-23
• FL-Next: tr=Cig3; Nicotiana tabacum (Common tobacco). 0.0
• Blast2go: telomerase activating protein est1 2.98929e-28
Internal
sp_v2.0_unigene19669 SustainPine v2.0 811
• AutoFact: Nonsense-mediated decay UPF3 [Medicago truncatula] 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: smg-4 upf3-like protein 0.0
N-terminus
sp_v2.0_unigene26994 SustainPine v2.0 586
• AutoFact: Nonsense-mediated decay UPF3 [Medicago truncatula] 3.0e-10
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
• Blast2go: smg-4 upf3-like protein 9.74052e-21
Internal
sp_v2.0_unigene30962 SustainPine v2.0 976
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: telomerase activating protein est1 0.0
Internal
sp_v2.0_unigene34245 SustainPine v2.0 475
• AutoFact: EST1 domain containing protein 8.0e-08
• FL-Next: tr=Cig3; Nicotiana tabacum (Common tobacco). 0.0
• Blast2go: telomerase activating protein est1 1.77065e-23
Putative N-terminus
sp_v2.0_unigene44723 SustainPine v2.0 172
• AutoFact: EST1 domain containing protein 6.0e-09
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: telomerase activating protein est1 6.94544e-18
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain