Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: double-strand break repair

Term: GO:0006302  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene962 SustainPine v2.0 1729
AutoFact: DNA repair protein RAD51 homolog n=1 Tax=Solanum lycopersicum RepID=RAD51_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna repair protein rad51 homolog 0.0
Complete
sp_v2.0_unigene3068 SustainPine v2.0 1078
AutoFact: Sister chromatid cohesion 1 protein 2 n=4 Tax=Arabidopsis RepID=SCC12_ARATH 2.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: sister chromatid cohesion 1 protein 2 0.0
C-terminus
sp_v2.0_unigene4991 SustainPine v2.0 636
AutoFact: DNA ligase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQI2_VITVI 0.0
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna ligase 0.0
Internal
sp_v2.0_unigene8155 SustainPine v2.0 746
AutoFact: DNA repair protein RAD50, putative n=1 Tax=Ricinus communis RepID=B9S9Y8_RICCO 0.0
FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair protein rad50 0.0
N-terminus
sp_v2.0_unigene9420 SustainPine v2.0 1274
AutoFact: DNA polymerase [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: dna polymerase 0.0
C-terminus
sp_v2.0_unigene11798 SustainPine v2.0 811
AutoFact: DNA repair protein XRCC3-like protein [Arabidopsis thaliana] ref|NP_851202.1| DNA repair protein XRCC3-like protein [Arabidopsis thaliana] sp|Q9FKM5.1|XRCC3_ARATH RecName: Full=DNA repair protein XRCC3 homolog; AltName: Full=X-ray repair cross-complementi 7.0e-36
FL-Next: sp=DNA repair protein XRCC3 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair protein xrcc3-like protein 2.10195e-44
Internal
sp_v2.0_unigene12217 SustainPine v2.0 703
AutoFact: DNA repair protein Rad50 n=8 Tax=Triticeae RepID=A8IE00_TRIMO 0.0
FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair protein rad50 0.0
Internal
sp_v2.0_unigene26296 SustainPine v2.0 1438
AutoFact: meiotic nuclear division protein 1-like protein [Arabidopsis thaliana] sp|Q8GYD2.1|MND1_ARATH RecName: Full=Meiotic nuclear division protein 1 homolog; Short=AtMND1; AltName: Full=Meiotic nuclear division 1-like protein dbj|BAC42364.1| unknown protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: meiotic nuclear division protein 1 homolog 0.0
Complete
sp_v2.0_unigene26993 SustainPine v2.0 424
AutoFact: DNA repair protein RAD50 [Arabidopsis thaliana] sp|Q9SL02.2|RAD50_ARATH RecName: Full=DNA repair protein RAD50; Short=AtRAD50 gb|AAF36810.1|AF168748_1 DNA repair-recombination protein [Arabidopsis thaliana] gb|AAD15407.2| putative RAD50 DNA repair protein 1.0e-35
FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair protein rad50 0.0
Internal
sp_v2.0_unigene32304 SustainPine v2.0 933
AutoFact: ATP-dependent DNA helicase 2 subunit KU80 [Arabidopsis thaliana] sp|Q9FQ09.1|KU80_ARATH RecName: Full=ATP-dependent DNA helicase 2 subunit KU80; AltName: Full=ATP-dependent DNA helicase 2 subunit 2; AltName: Full=ATP-dependent DNA helicase II 80 kDa subun 1.0e-30
FL-Next: sp=ATP-dependent DNA helicase 2 subunit KU80; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: atp-dependent dna helicase 2 subunit ku80-like 0.0
C-terminus
sp_v2.0_unigene32370 SustainPine v2.0 504
AutoFact: DNA repair protein RAD50 [Arabidopsis thaliana] sp|Q9SL02.2|RAD50_ARATH RecName: Full=DNA repair protein RAD50; Short=AtRAD50 gb|AAF36810.1|AF168748_1 DNA repair-recombination protein [Arabidopsis thaliana] gb|AAD15407.2| putative RAD50 DNA repair protein 0.0
FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair protein rad50 0.0
C-terminus
sp_v2.0_unigene37095 SustainPine v2.0 578
AutoFact: DNA ligase n=2 Tax=Oryza sativa RepID=B9FCD0_ORYSJ 2.0e-19
FL-Next: sp=Putative DNA ligase 4; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dna ligase 4-like 4.4103e-19
Internal
sp_v2.0_unigene37922 SustainPine v2.0 491
AutoFact: DNA repair protein RAD50 [Arabidopsis thaliana] sp|Q9SL02.2|RAD50_ARATH RecName: Full=DNA repair protein RAD50; Short=AtRAD50 gb|AAF36810.1|AF168748_1 DNA repair-recombination protein [Arabidopsis thaliana] gb|AAD15407.2| putative RAD50 DNA repair protein 7.0e-30
FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair protein rad50 8.63725e-40
Internal
sp_v2.0_unigene39076 SustainPine v2.0 535
AutoFact: DNA polymerase A family protein, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C6J5_ARATH 0.0
FL-Next: tr=At1g50840/F8A12_8; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna polymerase 0.0
Internal
sp_v2.0_unigene43074 SustainPine v2.0 341
AutoFact: DNA ligase n=1 Tax=Populus trichocarpa RepID=B9IN68_POPTR 7.0e-26
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna ligase 5.58879e-30
Internal
sp_v2.0_unigene43753 SustainPine v2.0 491
AutoFact: DNA-dependent protein kinase catalytic subunit [Gallus gallus] dbj|BAA36956.1| DNA-dependent protein kinase catalytic subunit [Gallus gallus] 2.0e-23
FL-Next: sp=Serine/threonine-protein kinase TOR; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dna-dependent protein kinase catalytic subunit 0.0
Internal
sp_v2.0_unigene46833 SustainPine v2.0 668
AutoFact: DNA-dependent protein kinase subunit [Dictyostelium discoideum AX4] sp|Q54UC0.2|PRKDC_DICDI RecName: Full=DNA-dependent protein kinase catalytic subunit; Short=DNA-PK catalytic subunit; Short=DNA-PKcs gb|EAL66880.2| DNA-dependent protein kinase subunit [D 3.0e-29
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: dna-dependent protein kinase catalytic subunit 0.0
Internal
sp_v2.0_unigene59373 SustainPine v2.0 669
AutoFact: putative RAD50 DNA repair protein [Arabidopsis thaliana] 0.0
FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair protein rad50 0.0
Internal
sp_v2.0_unigene62197 SustainPine v2.0 460
AutoFact: DNA polymerase lambda, putative n=1 Tax=Ricinus communis RepID=B9S2K3_RICCO 7.0e-23
FL-Next: tr=DNA polymerase lambda, putative; Ricinus communis (Castor bean). 0.0
Blast2go: dna polymerase lambda 5.10125e-27
Internal
sp_v2.0_unigene64002 SustainPine v2.0 551
AutoFact: meiotic nuclear division protein 1-like protein [Arabidopsis thaliana] sp|Q8GYD2.1|MND1_ARATH RecName: Full=Meiotic nuclear division protein 1 homolog; Short=AtMND1; AltName: Full=Meiotic nuclear division 1-like protein dbj|BAC42364.1| unknown protein [Ar 5.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: meiotic nuclear division protein 1-like protein 7.06022e-40
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain