Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: nucleoid

Term: GO:0009295  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene1817 SustainPine v2.0 1120
AutoFact: DNA gyrase subunit B, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRB_NICBE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna gyrase subunit b 0.0
N-terminus
sp_v2.0_unigene1981 SustainPine v2.0 816
AutoFact: putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; 54319-51679 [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: udp-n-acetylmuramoyl-l-alanyl-d-glutamate-- -diaminopimelate ligase-like 0.0
C-terminus
sp_v2.0_unigene2312 SustainPine v2.0 1214
AutoFact: Superoxide dismutase n=1 Tax=Ginkgo biloba RepID=B8YNX9_GINBI 0.0
FL-Next: sp=Superoxide dismutase [Fe], chloroplastic; Glycine max (Soybean) (Glycine hispida). 0.0
Blast2go: chloroplast iron superoxide dismutase 0.0
Complete
sp_v2.0_unigene3951 SustainPine v2.0 1841
AutoFact: PREDICTED: similar to DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Vitis vinifera RepID=UPI0001985B62 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna gyrase subunit a 0.0
Complete
sp_v2.0_unigene9420 SustainPine v2.0 1274
AutoFact: DNA polymerase [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: dna polymerase 0.0
C-terminus
sp_v2.0_unigene11783 SustainPine v2.0 1042
AutoFact: UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase, putative n=1 Tax=Ricinus communis RepID=B9RCC8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: udp-n-acetylmuramoyl-l-alanyl-d-glutamate-- -diaminopimelate ligase-like 0.0
Internal
sp_v2.0_unigene16249 SustainPine v2.0 1834
AutoFact: Elongation factor Tu n=3 Tax=Spermatophyta RepID=A9NWL9_PICSI 0.0
FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: elongation factor chloroplastic-like 0.0
Complete
sp_v2.0_unigene16732 SustainPine v2.0 1071
AutoFact: Elongation factor Tu n=3 Tax=Spermatophyta RepID=A9NWL9_PICSI 0.0
FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: elongation factor chloroplastic-like 0.0
C-terminus
sp_v2.0_unigene17457 SustainPine v2.0 566
AutoFact: 50S ribosomal protein L29 n=1 Tax=Camellia sinensis RepID=F4YFA4_CAMSI 1.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 50s ribosomal protein l29 0.0
Putative Complete
sp_v2.0_unigene18150 SustainPine v2.0 1128
AutoFact: 50S ribosomal protein L29 [Arabidopsis thaliana] sp|Q9FJP3.1|RK29_ARATH RecName: Full=50S ribosomal protein L29, chloroplastic; AltName: Full=CL29; Flags: Precursor pdb|3BBO|Z Chain Z, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 50s ribosomal protein l29 0.0
Complete
sp_v2.0_unigene18377 SustainPine v2.0 774
AutoFact: Thylakoid membrane phosphoprotein 14 kDa, chloroplastic n=2 Tax=Arabidopsis RepID=TMP14_ARATH 4.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene23678 SustainPine v2.0 1141
AutoFact: 50S ribosomal protein L12, chloroplastic n=2 Tax=Spinacia oleracea RepID=RK12_SPIOL 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal protein l12 1.4013e-45
Complete
sp_v2.0_unigene24037 SustainPine v2.0 1015
AutoFact: putative thioredoxin [Solanum lycopersicum] 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 5.46815e-33
Complete
sp_v2.0_unigene27942 SustainPine v2.0 847
AutoFact: 50S ribosomal protein L12, chloroplastic n=2 Tax=Spinacia oleracea RepID=RK12_SPIOL 6.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal protein l12 1.4013e-45
C-terminus
sp_v2.0_unigene29326 SustainPine v2.0 1828
AutoFact: DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRA_NICBE 0.0
FL-Next: sp=DNA gyrase subunit A, chloroplastic/mitochondrial; Nicotiana benthamiana. 0.0
Blast2go: dna gyrase subunit a 0.0
N-terminus
sp_v2.0_unigene29737 SustainPine v2.0 1758
AutoFact: Elongation factor Tu n=4 Tax=Oryza sativa RepID=Q6ZI53_ORYSJ 0.0
FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: elongation factor tu 0.0
C-terminus
sp_v2.0_unigene31922 SustainPine v2.0 1111
AutoFact: 50S ribosomal protein L12, chloroplastic n=2 Tax=Spinacia oleracea RepID=RK12_SPIOL 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal protein l12 2.8026e-45
Complete
sp_v2.0_unigene34589 SustainPine v2.0 462
AutoFact: DNA gyrase subunit A [Arabidopsis thaliana] sp|Q9CAF6.2|GYRA_ARATH RecName: Full=Probable DNA gyrase subunit A, chloroplastic/mitochondrial; Flags: Precursor gb|AEE74943.1| DNA gyrase subunit A [Arabidopsis thaliana] 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna gyrase subunit a 3.19216e-41
Putative C-terminus
sp_v2.0_unigene36853 SustainPine v2.0 971
AutoFact: plastid transcriptionally active 15 protein [Arabidopsis thaliana] dbj|BAB11580.1| unnamed protein product [Arabidopsis thaliana] gb|AAL91232.1| unknown protein [Arabidopsis thaliana] gb|AAN15573.1| unknown protein [Arabidopsis thaliana] gb|AED96463.1| pl 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 1.82729e-42
Putative N-terminus
sp_v2.0_unigene39076 SustainPine v2.0 535
AutoFact: DNA polymerase A family protein, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C6J5_ARATH 0.0
FL-Next: tr=At1g50840/F8A12_8; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna polymerase 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain