Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: posttranscriptional gene silencing by RNA

Term: GO:0035194  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene11184 SustainPine v2.0 625
AutoFact: symplekin [Arabidopsis thaliana] dbj|BAF00598.1| hypothetical protein [Arabidopsis thaliana] gb|AEE30851.1| symplekin [Arabidopsis thaliana] 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: symplekin 0.0
Internal
sp_v2.0_unigene14429 SustainPine v2.0 3380
AutoFact: cleavage and polyadenylation specificity factor subunit 2 [Arabidopsis thaliana] sp|Q9LKF9.2|CPSF2_ARATH RecName: Full=Cleavage and polyadenylation specificity factor subunit 2; AltName: Full=Cleavage and polyadenylation specificity factor 100 kDa subunit 0.0
FL-Next: sp=Cleavage and polyadenylation specificity factor subunit 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: cleavage and polyadenylation specificity factor 0.0
Complete
sp_v2.0_unigene19691 SustainPine v2.0 2498
AutoFact: Hydroxyproline-rich glycoprotein-like protein n=3 Tax=Arabidopsis RepID=Q8VYM7_ARATH 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hydroxyproline-rich glyco protein 0.0
Complete
sp_v2.0_unigene22064 SustainPine v2.0 814
AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana] gb|AAL67014.1| putative RNA helicase [Arabidopsis thaliana] gb|AAM91806.1| putative RNA helicase [Arabidopsis thaliana] gb|AEE31492.1| pre-mRNA-splicing factor ATP-dependent 3.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-mrna-splicing factor atp-dependent rna helicase dhx16 0.0
Putative C-terminus
sp_v2.0_unigene35266 SustainPine v2.0 509
AutoFact: symplekin [Arabidopsis thaliana] emb|CAB81923.1| putative protein [Arabidopsis thaliana] gb|AED90339.1| symplekin [Arabidopsis thaliana] 1.0e-34
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: unnamed protein product [Vitis vinifera] 0.0
Internal
sp_v2.0_unigene41750 SustainPine v2.0 515
AutoFact: symplekin [Arabidopsis thaliana] emb|CAB81923.1| putative protein [Arabidopsis thaliana] gb|AED90339.1| symplekin [Arabidopsis thaliana] 3.0e-26
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: lcr bet1-like partial 1.23952e-35
Internal
sp_v2.0_unigene42250 SustainPine v2.0 510
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7UBN7_VITVI 3.0e-11
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase iv largest subunit 1.73147e-13
Internal
sp_v2.0_unigene44212 SustainPine v2.0 196
AutoFact: RNA helicase-like [Oryza sativa Japonica Group] 4.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-mrna-splicing factor atp-dependent rna helicase dhx16 8.65231e-32
Internal
sp_v2.0_unigene46238 SustainPine v2.0 292
AutoFact: symplekin [Arabidopsis thaliana] emb|CAB81923.1| putative protein [Arabidopsis thaliana] gb|AED90339.1| symplekin [Arabidopsis thaliana] 4.0e-21
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: lcr bet1-like partial 2.10344e-30
Internal
sp_v2.0_unigene57592 SustainPine v2.0 270
AutoFact: symplekin [Arabidopsis thaliana] emb|CAB81923.1| putative protein [Arabidopsis thaliana] gb|AED90339.1| symplekin [Arabidopsis thaliana] 4.0e-10
FL-Next: tr=Os07g0693900 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: uncharacterized protein loc100776979 1.52487e-15
Internal
sp_v2.0_unigene59449 SustainPine v2.0 1305
AutoFact: PREDICTED: similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733); ATP-dependent RNA helicase n=1 Tax=Vitis vinifera RepID=UPI00019851EB 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pre-mrna-splicing factor atp-dependent rna helicase dhx16 0.0
Internal
sp_v2.0_unigene66501 SustainPine v2.0 389
AutoFact: Hydroxyproline-rich glycoprotein-like protein n=3 Tax=Arabidopsis RepID=Q8VYM7_ARATH 4.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: proline-rich protein 4.82143e-21
Internal
sp_v2.0_unigene70134 SustainPine v2.0 353
AutoFact: Cleavage and polyadenylation specificity factor, putative n=1 Tax=Ricinus communis RepID=B9RVY3_RICCO 3.0e-33
FL-Next: sp=Cleavage and polyadenylation specificity factor subunit 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: cleavage and polyadenylation specificity factor 5.43803e-33
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain