Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: double-stranded DNA binding

Term: GO:0003690  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene263 SustainPine v2.0 1697
AutoFact: Ku70 homolog [Populus nigra] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent dna helicase 2 subunit ku70 0.0
C-terminus
sp_v2.0_unigene1635 SustainPine v2.0 2361
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDJ8_RICCO 0.0
FL-Next: sp=Flap endonuclease GEN-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: 5 -3 exonuclease-like protein 0.0
Putative Complete
sp_v2.0_unigene4405 SustainPine v2.0 245
AutoFact: PREDICTED: catenin (cadherin-associated protein), beta 1, 88kDa isoform 2 n=1 Tax=Pan troglodytes RepID=UPI0000E1FC25 4.0e-29
Blast2go: catenin beta-1 4.68707e-39
Putative coding
sp_v2.0_unigene5653 SustainPine v2.0 1520
AutoFact: Transcription factor n=1 Tax=Lycoris longituba RepID=D6MKH0_9ASPA 9.99967e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor hy5 0.0
Complete
sp_v2.0_unigene11014 SustainPine v2.0 893
AutoFact: Ku70 homolog [Populus nigra] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent dna helicase 2 subunit ku70 0.0
N-terminus
sp_v2.0_unigene11500 SustainPine v2.0 496
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp binding 9.6872e-32
Internal
sp_v2.0_unigene13309 SustainPine v2.0 442
AutoFact: serine/threonine-protein kinase-like protein CCR2 [Arabidopsis thaliana] sp|O80963.1|ACCR2_ARATH RecName: Full=Serine/threonine-protein kinase-like protein CCR2; AltName: Full=Protein CRINKLY 4 RELATED 2; Short=AtCRR2; Flags: Precursor gb|AAC28989.1| puta 5.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 7.33471e-36
Internal
sp_v2.0_unigene13881 SustainPine v2.0 1126
AutoFact: [R] COG2118 DNA-binding protein 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: double-stranded dna-binding-like protein 0.0
Complete
sp_v2.0_unigene15416 SustainPine v2.0 1282
AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 2.0e-40
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene18109 SustainPine v2.0 1288
AutoFact: Transcription factor hy5, putative n=1 Tax=Ricinus communis RepID=B9RP68_RICCO 1.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor 0.0
Complete
sp_v2.0_unigene18731 SustainPine v2.0 1610
AutoFact: CDC27 domain containing protein 4.0e-06
FL-Next: sp=DNA-binding protein BIN4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-binding protein bin4 0.0
C-terminus
sp_v2.0_unigene25541 SustainPine v2.0 1231
AutoFact: Cinnamoyl CoA reductase n=5 Tax=Populus trichocarpa RepID=B9GMB5_POPTR 0.0
FL-Next: tr=Cinnamoyl-CoA reductase; Pinus taeda (Loblolly pine). 0.0
Blast2go: cinnamoyl reductase 0.0
Complete
sp_v2.0_unigene29920 SustainPine v2.0 396
AutoFact: replication factor C1 [Arabidopsis thaliana] emb|CAC34494.1| replication factor C large subunit-like protein [Arabidopsis thaliana] gb|AAT47816.1| At5g22010 [Arabidopsis thaliana] gb|AED92968.1| replication factor C1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: replication factor c subunit 1-like 0.0
Internal
sp_v2.0_unigene32304 SustainPine v2.0 933
AutoFact: ATP-dependent DNA helicase 2 subunit KU80 [Arabidopsis thaliana] sp|Q9FQ09.1|KU80_ARATH RecName: Full=ATP-dependent DNA helicase 2 subunit KU80; AltName: Full=ATP-dependent DNA helicase 2 subunit 2; AltName: Full=ATP-dependent DNA helicase II 80 kDa subun 1.0e-30
FL-Next: sp=ATP-dependent DNA helicase 2 subunit KU80; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: atp-dependent dna helicase 2 subunit ku80-like 0.0
C-terminus
sp_v2.0_unigene47216 SustainPine v2.0 236
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RB88_RICCO 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp binding 7.37884e-14
Internal
sp_v2.0_unigene48475 SustainPine v2.0 618
AutoFact: Contains similarity to excision repair protein ERCC5 from Homo sapiens gi|1082359 and contains XPG N-terminal PF|00752 and XPG I-region PF|00867 domains [Arabidopsis thaliana] 2.0e-22
FL-Next: sp=Flap endonuclease GEN-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: 5 -3 exonuclease-like protein 2.84613e-28
N-terminus
sp_v2.0_unigene77261 SustainPine v2.0 369
AutoFact: cinnamoyl CoA reductase, putative [Arabidopsis thaliana] 6.0e-37
FL-Next: tr=Cinnamoyl-CoA reductase; Pinus taeda (Loblolly pine). 0.0
Blast2go: cinnamoyl- reductase 0.0
Internal
sp_v2.0_unigene81339 SustainPine v2.0 765
AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 5.0e-20
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: protein 2.64476e-24
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain