Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: nuclear speck

Term: GO:0016607  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene27273 SustainPine v2.0 1009
AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich splicing 0.0
C-terminus
sp_v2.0_unigene31343 SustainPine v2.0 1306
AutoFact: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SAR0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-mrna-splicing factor sf2 0.0
Complete
sp_v2.0_unigene34067 SustainPine v2.0 442
AutoFact: splicing factor SR1B [Arabidopsis thaliana] gb|AEE82170.1| splicing factor SR1B [Arabidopsis thaliana] 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor sr1b 1.49436e-32
N-terminus
sp_v2.0_unigene35286 SustainPine v2.0 967
AutoFact: elongation factor like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u5 small nuclear ribonucleoprotein component 0.0
C-terminus
sp_v2.0_unigene45619 SustainPine v2.0 1530
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SEX4_RICCO 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: light-regulated zinc finger protein 1 0.0
Putative Complete
sp_v2.0_unigene47498 SustainPine v2.0 683
AutoFact: SC35-like splicing factor 28 [Arabidopsis thaliana] gb|ABE66166.1| 28 kDa SC35-like splicing factor [Arabidopsis thaliana] gb|AED92615.1| SC35-like splicing factor 28 [Arabidopsis thaliana] 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing arginine serine-rich 13a 6.10717e-30
Putative C-terminus
sp_v2.0_unigene64609 SustainPine v2.0 641
AutoFact: putative splicing factor [Oryza sativa Japonica Group] gb|ABF96207.1| RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] gb|EEC75348.1| hypothetical protein OsI_11773 [Oryza sativa Indica Group] gb|EEE59134.1| hypothetical prote 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: sc35-like splicing factor 33 0.0
Putative C-terminus
sp_v2.0_unigene70305 SustainPine v2.0 222
AutoFact: putative small nuclear ribonucleoprotein Prp4p [Arabidopsis thaliana] dbj|BAF01385.1| putative U4/U6 small nuclear ribonucleoprotein [Arabidopsis thaliana] 6.0e-07
FL-Next: sp=U4/U6 small nuclear ribonucleoprotein PRP4-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: u4 u6 small nuclear ribonucleoprotein prp4-like 2.81745e-10
Internal
sp_v2.0_unigene79038 SustainPine v2.0 505
AutoFact: putative splicing factor [Oryza sativa Japonica Group] gb|ABF96207.1| RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] gb|EEC75348.1| hypothetical protein OsI_11773 [Oryza sativa Indica Group] gb|EEE59134.1| hypothetical prote 8.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif family expressed 3.5424e-24
Putative N-terminus
sp_v2.0_unigene81008 SustainPine v2.0 396
AutoFact: RNA recognition motif and CCHC-type zinc finger domain-containing protein [Arabidopsis thaliana] emb|CAB67657.2| splicing factor-like protein [Arabidopsis thaliana] dbj|BAH19424.1| AT3G53500 [Arabidopsis thaliana] gb|AEE79098.1| RNA recognition motif and 5.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif and cchc-type zinc finger domain-containing protein 5.11352e-34
N-terminus
sp_v2.0_unigene82749 SustainPine v2.0 414
AutoFact: Heat shock 70 kDa protein 1L (Heat shock 70 kDa protein 1-like) (Heat shock 70 kDa protein 1-Hom) (HSP70-Hom). n=1 Tax=Homo sapiens RepID=UPI0002065929 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heat shock cognate 70 kda 1.72267e-29
Putative N-terminus
sp_v2.0_unigene84994 SustainPine v2.0 838
AutoFact: arginine/serine-rich-splicing factor RSP31 [Arabidopsis thaliana] sp|P92964.2|RSP31_ARATH RecName: Full=Arginine/serine-rich-splicing factor RSP31 gb|AAL27502.1|AF439831_1 AT3g61860/F21F14_30 [Arabidopsis thaliana] gb|AAM78075.1| AT3g61860/F21F14_30 [Arab 0.0
FL-Next: sp=Arginine/serine-rich-splicing factor RSP31; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: arginine serine-rich-splicing factor rsp31-like 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain