Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: cellular macromolecule biosynthetic process

Term: GO:0034645  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene3082 SustainPine v2.0 968
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Selaginella moellendorffii RepID=D8SDS6_SELML 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna-directed rna polymerase i subunit rpa1-like 0.0
Internal
sp_v2.0_unigene4094 SustainPine v2.0 347
• AutoFact: Tetratricopeptide repeat-containing protein n=4 Tax=Arabidopsis RepID=F4HS99_ARATH 5.0e-25
• FL-Next: tr=Tetratricopeptide repeat-containing protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
• Blast2go: tetratricopeptide repeat-containing protein 4.33558e-30
Internal
sp_v2.0_unigene7539 SustainPine v2.0 1683
• AutoFact: TBP-associated factor 4 [Arabidopsis thaliana] gb|AAR21620.1| TATA-binding protein associated factor 4b [Arabidopsis thaliana] dbj|BAF01312.1| hypothetical protein [Arabidopsis thaliana] gb|AED94913.1| TBP-associated factor 4 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: transcription initiation 0.0
C-terminus
sp_v2.0_unigene9465 SustainPine v2.0 1038
• AutoFact: WS0286.B21_F03 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS0286_F03 5, mRNA sequence. 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: bromodomain adjacent to zinc finger domain protein 2b 8.00455e-17
Internal
sp_v2.0_unigene10741 SustainPine v2.0 2002
• AutoFact: Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana] ref|NP_172228.3| Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana] emb|CAA11525.1| transcription factor IIA large subunit [Arabidopsis thaliana] gb|AAR28029.1| TFIIA-L1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription factor transcription initiation factor 0.0
Putative Complete
sp_v2.0_unigene11710 SustainPine v2.0 1217
• AutoFact: putative transcription initiation factor [Oryza sativa Japonica Group] gb|ABB46979.1| mutant TFIIF-alpha, putative, expressed [Oryza sativa Japonica Group] 2.0e-32
• FL-Next: Isoform 2 of Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74 0.0
• Blast2go: transcription initiation factor iif subunit alpha 7.42688e-44
C-terminus
sp_v2.0_unigene16309 SustainPine v2.0 1558
• AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 60s acidic ribosomal protein p0 0.0
Complete
sp_v2.0_unigene17724 SustainPine v2.0 564
• AutoFact: transcription initiation factor TFIIA large subunit [Arabidopsis thaliana] gb|AAL11553.1|AF424559_1 At1g07470/F22G5_13 [Arabidopsis thaliana] gb|AAK64164.1| putative transcription factor IIA large subunit [Arabidopsis thaliana] gb|AAK83596.1| At1g07470/F2 3.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription factor transcription initiation factor 0.0
C-terminus
sp_v2.0_unigene19075 SustainPine v2.0 361
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TI03_VITVI 2.0e-39
• FL-Next: sp=DNA-directed RNA polymerase; Pinus pinaster (Maritime pine). Plastid; Chloroplast. 0.0
• Blast2go: dna-directed rna polymerase i subunit rpa1-like 1.4013e-45
Internal
sp_v2.0_unigene21434 SustainPine v2.0 1614
• AutoFact: 60S acidic ribosomal protein P0-1 n=2 Tax=Arabidopsis RepID=RLA01_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 60s acidic ribosomal protein p0 0.0
Complete
sp_v2.0_unigene22796 SustainPine v2.0 1489
• AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 60s acidic ribosomal protein p0 0.0
Complete
sp_v2.0_unigene25641 SustainPine v2.0 1603
• AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 60s acidic ribosomal protein p0 0.0
Complete
sp_v2.0_unigene41603 SustainPine v2.0 574
• AutoFact: tyrS tyrosyl-tRNA synthetase [Arabidopsis thaliana] gb|AAF32473.1| putative tyrosyl-tRNA synthetase [Arabidopsis thaliana] dbj|BAD95182.1| putative tyrosyl-tRNA synthetase [Arabidopsis thaliana] gb|ABK32110.1| At3g02660 [Arabidopsis thaliana] gb|AEE73845. 0.0
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: tyrosyl-trna synthetase-like 0.0
Internal
sp_v2.0_unigene60307 SustainPine v2.0 1507
• AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 60s acidic ribosomal protein p0 0.0
Complete
sp_v2.0_unigene74436 SustainPine v2.0 256
• AutoFact: PREDICTED: ubiquitin A-52 residue ribosomal protein fusion product 1 n=1 Tax=Rattus norvegicus RepID=UPI0001CF4A0F 9.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ubiquitin 2.11893e-13
Putative C-terminus
sp_v2.0_unigene84296 SustainPine v2.0 723
• AutoFact: Suppressor of ty, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9SEX9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
• Blast2go: transcription elongation factor spt6 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain