Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA splicing

Term: GO:0008380  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene634 SustainPine v2.0 2577
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9R9V5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 1 0.0
Putative C-terminus
sp_v2.0_unigene2083 SustainPine v2.0 2880
AutoFact: multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene2335 SustainPine v2.0 1003
AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 1.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 1 0.0
Internal
sp_v2.0_unigene2478 SustainPine v2.0 1442
AutoFact: WD-40 repeat protein [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd40 repeat-containing protein smu1 0.0
Putative Complete
sp_v2.0_unigene3087 SustainPine v2.0 1052
AutoFact: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain [Arabidopsis thaliana] ref|NP_001078041.1| GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain [Arabidopsis thaliana] gb|AAD23716.1| hypothetic 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene3229 SustainPine v2.0 1373
AutoFact: Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gb|AAC79107.1| hypothetical protein [Arabidopsis thaliana] emb|CAB77784.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82257.1| Mitochondrial transcription terminat 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mitochondrial transcription termination factor family protein 0.0
C-terminus
sp_v2.0_unigene3678 SustainPine v2.0 2413
AutoFact: RecName: Full=Splicing factor U2af large subunit B; AltName: Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa subunit B; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit B; Short=U2 snRNP auxiliary factor large subun 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene4023 SustainPine v2.0 2443
AutoFact: pfam07808, RED_N, RED-like protein N-terminal region 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 0.0
Complete
sp_v2.0_unigene4176 SustainPine v2.0 1836
AutoFact: Intron maturase, type II family protein [Arabidopsis thaliana] dbj|BAB10231.1| unnamed protein product [Arabidopsis thaliana] gb|AED95448.1| Intron maturase, type II family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized mitochondrial protein ymf11-like 0.0
C-terminus
sp_v2.0_unigene4182 SustainPine v2.0 527
AutoFact: WD-40 repeat protein [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: wd40 repeat-containing protein smu1 0.0
N-terminus
sp_v2.0_unigene4393 SustainPine v2.0 1994
AutoFact: Helicase, putative n=1 Tax=Ricinus communis RepID=B9SPB9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: superkiller viralicidic activity 2-like 2-like 0.0
N-terminus
sp_v2.0_unigene4974 SustainPine v2.0 1060
AutoFact: Type II intron maturase family protein n=4 Tax=Andropogoneae RepID=B6SWF1_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized mitochondrial protein ymf11-like 0.0
Internal
sp_v2.0_unigene4992 SustainPine v2.0 1644
AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich-splicing factor rsp40 0.0
Complete
sp_v2.0_unigene5830 SustainPine v2.0 2134
AutoFact: Arsenite-resistance protein, putative n=1 Tax=Ricinus communis RepID=B9S6M6_RICCO 0.0
FL-Next: sp=Serrate RNA effector molecule; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: serrate rna effector molecule-like 0.0
C-terminus
sp_v2.0_unigene6053 SustainPine v2.0 506
AutoFact: WS01017.B21.1_P02 SS-R-N-A-11 Picea sitchensis cDNA clone WS01017_P02 3', mRNA sequence. 0.0
FL-Next: tr=Os03g0270200 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein 2.90775e-27
N-terminus
sp_v2.0_unigene6136 SustainPine v2.0 1096
AutoFact: Potassium channel regulatory factor, putative n=1 Tax=Ricinus communis RepID=B9S407_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: pre-mrna-splicing factor 18-like 0.0
N-terminus
sp_v2.0_unigene6988 SustainPine v2.0 1554
AutoFact: Beta-catenin-like protein 1 n=1 Tax=Zea mays RepID=B6SWH5_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: beta-catenin-like protein 1-like 0.0
C-terminus
sp_v2.0_unigene7964 SustainPine v2.0 2967
AutoFact: pre-mRNA-processing protein 40A [Arabidopsis thaliana] gb|AEE32062.1| pre-mRNA-processing protein 40A [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-mrna-processing factor 40 homolog b-like 0.0
Complete
sp_v2.0_unigene8760 SustainPine v2.0 1507
AutoFact: transcription elongation regulator 1 [Arabidopsis thaliana] dbj|BAB01298.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76298.1| transcription elongation regulator 1 [Arabidopsis thaliana] 7.0e-40
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: transcription elongation regulator 1-like 0.0
C-terminus
sp_v2.0_unigene10714 SustainPine v2.0 915
AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 1 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain