Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene596 SustainPine v2.0 1854
AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] sp|A9LNK9.1|CPSF_ARATH RecName: Full=Cleavage and polyadenylation specificity factor CPSF30; AltName: Full=Zinc finger CCCH domain-containing protein 11; Short=AtC3H11 gb|ABX260 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cleavage and polyadenylation specificity factor cpsf30 0.0
Putative N-terminus
sp_v2.0_unigene649 SustainPine v2.0 1173
AutoFact: Exosome complex exonuclease rrp43, putative n=1 Tax=Ricinus communis RepID=B9T1F1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: exosome complex component rrp43-like 0.0
Complete
sp_v2.0_unigene806 SustainPine v2.0 2290
AutoFact: Exosome complex exonuclease rrp45, putative n=1 Tax=Ricinus communis RepID=B9SYQ9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: 3 -5 -exoribonuclease cer7 protein 0.0
Complete
sp_v2.0_unigene1249 SustainPine v2.0 1424
AutoFact: Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3 exoribonuclease [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: exosome complex component rrp46 0.0
Complete
sp_v2.0_unigene1824 SustainPine v2.0 1308
AutoFact: Ribonuclease III-like protein [Arabidopsis thaliana] gb|AAQ62445.1| At1g55140 [Arabidopsis thaliana] dbj|BAD42926.1| hypothetical protein [Arabidopsis thaliana] gb|AEE33190.1| Ribonuclease III-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene2354 SustainPine v2.0 1396
AutoFact: XPA-binding protein, putative; K12867 pre-mRNA-splicing factor SYF1 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: pre-mrna-splicing factor syf1-like 0.0
C-terminus
sp_v2.0_unigene2510 SustainPine v2.0 985
AutoFact: PGAP1 domain containing protein 9.0e-05
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: uncharacterized protein loc100247423 0.0
C-terminus
sp_v2.0_unigene2757 SustainPine v2.0 1042
AutoFact: putative polyribonucleotide nucleotidyltransferase [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polyribonucleotide nucleotidyltransferase 0.0
Putative C-terminus
sp_v2.0_unigene2863 SustainPine v2.0 894
AutoFact: tRNA/rRNA methyltransferase (SpoU) family protein n=3 Tax=Arabidopsis RepID=F4JP86_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: trna rrna methyltransferase family protein 0.0
Putative C-terminus
sp_v2.0_unigene3256 SustainPine v2.0 1196
AutoFact: Peptidyl-tRNA hydrolase [Arabidopsis thaliana] sp|Q6NLS8.1|PTHM_ARATH RecName: Full=Peptidyl-tRNA hydrolase, mitochondrial; AltName: Full=M-PTH; AltName: Full=Mitochondrial CRS2-like protein; AltName: Full=Mitochondrial RNA splicing factor; Flags: Precurs 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: peptidyl-trna mitochondrial-like 0.0
Complete
sp_v2.0_unigene3469 SustainPine v2.0 1316
AutoFact: Peptidyl-tRNA hydrolase [Arabidopsis thaliana] sp|Q6NLS8.1|PTHM_ARATH RecName: Full=Peptidyl-tRNA hydrolase, mitochondrial; AltName: Full=M-PTH; AltName: Full=Mitochondrial CRS2-like protein; AltName: Full=Mitochondrial RNA splicing factor; Flags: Precurs 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chloroplastic group iib intron splicing facilitator crs2-b 0.0
Complete
sp_v2.0_unigene4435 SustainPine v2.0 627
AutoFact: tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis thaliana] gb|AEE30912.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis thaliana] 9.99967e-42
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: trna nucleotidyltransferase (cca-adding enzyme) 0.0
Internal
sp_v2.0_unigene5495 SustainPine v2.0 1047
AutoFact: polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB87625.1| polynucleotide phosphorylase [Arabidop 3.0e-40
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: polyribonucleotide nucleotidyltransferase 4.2039e-45
Putative N-terminus
sp_v2.0_unigene5644 SustainPine v2.0 602
AutoFact: Polynucleotide phosphorylase n=1 Tax=Pisum sativum RepID=O24288_PEA 0.0
FL-Next: tr=Polynucleotide phosphorylase; Pisum sativum (Garden pea). 0.0
Blast2go: polynucleotide phosphorylase 0.0
Internal
sp_v2.0_unigene6299 SustainPine v2.0 3581
AutoFact: arabinose kinase [Arabidopsis thaliana] sp|O23461.1|ARAK_ARATH RecName: Full=L-arabinokinase; Short=AtISA1 emb|CAB10392.1| galactokinase like protein [Arabidopsis thaliana] emb|CAB78655.1| galactokinase like protein [Arabidopsis thaliana] gb|AEE83696.1| a 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: galactokinase like protein 0.0
Complete
sp_v2.0_unigene6879 SustainPine v2.0 1734
AutoFact: RNA methyltransferase family protein [Arabidopsis thaliana] dbj|BAB01724.1| RNA methyltransferase-like protein [Arabidopsis thaliana] gb|AEE76490.1| RNA methyltransferase family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna methyltransferase family protein 0.0
C-terminus
sp_v2.0_unigene7401 SustainPine v2.0 2203
AutoFact: RNA 3'-terminal phosphate cyclase-like protein [Arabidopsis thaliana] sp|Q9C578.1|RCL1_ARATH RecName: Full=Probable RNA 3'-terminal phosphate cyclase-like protein emb|CAC34503.1| RNA 3'-terminal phosphate cyclase-like protein [Arabidopsis thaliana] gb|AAN 0.0
FL-Next: sp=Probable RNA 3'-terminal phosphate cyclase-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene8408 SustainPine v2.0 1184
AutoFact: Magnesium transporter CorA-like-like protein [Arabidopsis thaliana] gb|AAL85000.1| At2g04305/T23O15.7 [Arabidopsis thaliana] gb|AAO11621.1| At2g04305/T23O15.7 [Arabidopsis thaliana] gb|AEC05820.1| Magnesium transporter CorA-like-like protein [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene8854 SustainPine v2.0 941
AutoFact: OBP33pep like protein n=3 Tax=Arabidopsis RepID=Q9SUL3_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: trna rrna methyltransferase family protein 0.0
Complete
sp_v2.0_unigene8914 SustainPine v2.0 2824
AutoFact: pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb|AAL07170.1| unknown protein [Arabidopsis thaliana] gb|AAM14126.1| unknown protein [Arabidopsis thaliana] gb|AAM65430.1| unknown [Arabidopsis thaliana] gb|AEE27652.1| pre-mRNA-processing factor 39 [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain