Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA metabolic process

Term: GO:0016070  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene932 SustainPine v2.0 1304
AutoFact: Ribonuclease n=1 Tax=Picea sitchensis RepID=D5AEE7_PICSI 0.0
FL-Next: sp=Ribonuclease; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribonuclease h2 subunit a 0.0
Complete
sp_v2.0_unigene2320 SustainPine v2.0 1080
AutoFact: [L] COG4581 Superfamily II RNA helicase 1.96182e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: superkiller viralicidic activity 2-like 2-like 0.0
Internal
sp_v2.0_unigene2471 SustainPine v2.0 2230
AutoFact: Eukaryotic translation initiation factor 4G n=2 Tax=Carica papaya RepID=E3V0H9_CARPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: translation initiation factor eif-4f 0.0
Complete
sp_v2.0_unigene2507 SustainPine v2.0 2042
AutoFact: SRI domain containing protein 2.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 0.0
C-terminus
sp_v2.0_unigene3046 SustainPine v2.0 1863
AutoFact: translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] gb|AAC12836.1| putative translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] gb|AAM98194.1| putative translation initiation factor eIF-2B epsilon subunit [A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: translation initiation factor eif-2b epsilon subunit 0.0
Putative Complete
sp_v2.0_unigene3577 SustainPine v2.0 1807
AutoFact: Os12g0256300 protein n=6 Tax=Oryza sativa RepID=Q2QUQ9_ORYSJ 0.0
FL-Next: tr=Putative pre-mRNA-splicing factor cwc-22; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: pre-mrna-splicing factor cwc-22 0.0
Putative C-terminus
sp_v2.0_unigene4300 SustainPine v2.0 2539
AutoFact: Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2 [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: regulator of nonsense transcripts 2-like 0.0
C-terminus
sp_v2.0_unigene7407 SustainPine v2.0 523
AutoFact: ATP-dependent helicase, putative n=1 Tax=Ricinus communis RepID=B9SWF5_RICCO 1.0e-17
FL-Next: tr=ATP-dependent helicase, putative; Ricinus communis (Castor bean). 0.0
Blast2go: dna repair and recombination protein rad54-like 2.5728e-22
Internal
sp_v2.0_unigene7532 SustainPine v2.0 592
AutoFact: Pseudouridine synthase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SJM4_VITVI 3.0e-31
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: trna pseudouridine synthase-like 9.1229e-37
Complete
sp_v2.0_unigene7690 SustainPine v2.0 458
AutoFact: [O] COG5272 Ubiquitin 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin 8.16695e-14
Putative Complete
sp_v2.0_unigene9106 SustainPine v2.0 943
AutoFact: Helicase, putative n=1 Tax=Ricinus communis RepID=B9SZG8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hua enhancer 2 0.0
Internal
sp_v2.0_unigene9317 SustainPine v2.0 993
AutoFact: RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana] gb|AAC67203.2| expressed protein [Arabidopsis thaliana] gb|AAO64196.1| putative DEAD/DEAH box RNA helicase (HUA ENHANCER2) [Arabidopsis thaliana] gb|AEC06028.1| RNA helicase, ATP-depend 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hua enhancer 2 0.0
Putative C-terminus
sp_v2.0_unigene10509 SustainPine v2.0 770
AutoFact: PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Monodelphis domestica] 6.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u7 small nuclear rna associated 0.0
Complete
sp_v2.0_unigene10725 SustainPine v2.0 1155
AutoFact: metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis thaliana] gb|AAK63855.1|AF389282_1 AT5g40270/MSN9_170 [Arabidopsis thaliana] dbj|BAB10908.1| unnamed protein product [Arabidopsis thaliana] gb|AAM26721.1| AT5g40270/MSN9_170 [Arabi 0.0
FL-Next: tr=Metal-dependent phosphohydrolase HD domain-containing protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: metal-dependent phosphohydrolase hd domain-containing protein 0.0
C-terminus
sp_v2.0_unigene14491 SustainPine v2.0 2367
AutoFact: eukaryotic translation initiation factor 5 [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic translation initiation factor 5 0.0
Complete
sp_v2.0_unigene14951 SustainPine v2.0 992
AutoFact: Ubiquitin-60S ribosomal protein L40-1 n=69 Tax=Eukaryota RepID=RL40A_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin fusion protein 0.0
Complete
sp_v2.0_unigene24775 SustainPine v2.0 1077
AutoFact: Polyubiquitin 9 n=1 Tax=Arabidopsis thaliana RepID=UBQ9_ARATH 0.0
FL-Next: sp=Polyubiquitin 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ubiquitin-like protein 0.0
Complete
sp_v2.0_unigene24780 SustainPine v2.0 751
AutoFact: Ubiquitin family protein n=3 Tax=Tetrahymena thermophila RepID=UPI00006CC966 0.0
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: ubiquitin family protein 0.0
Putative N-terminus
sp_v2.0_unigene26432 SustainPine v2.0 934
AutoFact: Ubiquitin-60S ribosomal protein L40-1 n=69 Tax=Eukaryota RepID=RL40A_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin a-52 residue ribosomal protein fusion product 1 0.0
Complete
sp_v2.0_unigene30384 SustainPine v2.0 872
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R8Z2_RICCO 2.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein mitochondrial-like 7.34139e-39
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain