Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: rRNA binding

Term: GO:0019843  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene319 SustainPine v2.0 1166
AutoFact: 50S ribosomal protein L4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 50s ribosomal protein l4 0.0
C-terminus
sp_v2.0_unigene914 SustainPine v2.0 1085
AutoFact: 30S ribosomal protein S6 alpha [Arabidopsis thaliana] sp|Q8VY91.1|RR6_ARATH RecName: Full=30S ribosomal protein S6 alpha, chloroplastic; Flags: Precursor gb|AAL61951.1| plastid ribosomal protein S6, putative [Arabidopsis thaliana] gb|AAM47900.1| plastid r 5.04467e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene1032 SustainPine v2.0 1345
AutoFact: 50S ribosomal protein L21 n=4 Tax=Andropogoneae RepID=B6TJJ8_MAIZE 4.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 50s ribosomal protein l21 0.0
Complete
sp_v2.0_unigene1236 SustainPine v2.0 1563
AutoFact: 30S ribosomal protein S5, putative n=1 Tax=Ricinus communis RepID=B9RBC3_RICCO 1.96182e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 30s ribosomal protein s5 0.0
Complete
sp_v2.0_unigene1747 SustainPine v2.0 1706
AutoFact: Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI 0.0
FL-Next: tr=Ribosomal protein S3; Picea smithiana. Mitochondrion. 0.0
Blast2go: ribosomal protein s3 0.0
C-terminus
sp_v2.0_unigene2994 SustainPine v2.0 1865
AutoFact: replication factor C subunit 3 [Arabidopsis thaliana] gb|AAG51681.1|AC010704_25 putative replication factor C; 24844-22715 [Arabidopsis thaliana] gb|AAL38893.1| putative replication factor C [Arabidopsis thaliana] gb|AAM51357.1| putative replication facto 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: replication factor c subunit 5-like 0.0
Complete
sp_v2.0_unigene3439 SustainPine v2.0 1012
AutoFact: 50S ribosomal protein L20 n=1 Tax=Picea sitchensis RepID=A9NPE5_PICSI 0.0
FL-Next: sp=50S ribosomal protein L20; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 50s ribosomal protein l20 0.0
Complete
sp_v2.0_unigene5311 SustainPine v2.0 1071
AutoFact: 50S ribosomal protein L9, chloroplastic n=1 Tax=Pisum sativum RepID=RK9_PEA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 50s ribosomal protein l9 0.0
Complete
sp_v2.0_unigene5411 SustainPine v2.0 1269
AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s11 0.0
Complete
sp_v2.0_unigene6193 SustainPine v2.0 1029
AutoFact: RecName: Full=50S ribosomal protein L5, chloroplastic pdb|3BBO|H Chain H, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 50s ribosomal protein l5 0.0
Complete
sp_v2.0_unigene6616 SustainPine v2.0 1052
AutoFact: plastid-specific 30S ribosomal protein [Oryza sativa Indica Group] 6.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: plastid-specific 30s ribosomal protein 3 0.0
Complete
sp_v2.0_unigene8004 SustainPine v2.0 1136
AutoFact: 50S ribosomal protein L10, putative n=1 Tax=Ricinus communis RepID=B9RY97_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene8650 SustainPine v2.0 1473
AutoFact: RecName: Full=50S ribosomal protein L4, chloroplastic; Short=R-protein L4; Flags: Precursor pdb|3BBO|G Chain G, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome emb|CAA75149.1| chloroplast ribosom 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 50s ribosomal protein l4 0.0
Complete
sp_v2.0_unigene9986 SustainPine v2.0 1864
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SJX0_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: structural constituent of 0.0
Complete
sp_v2.0_unigene12612 SustainPine v2.0 530
AutoFact: 40S ribosomal protein S9 n=2 Tax=Rhizoctonia solani RepID=A5X2M3_THACU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s9 0.0
Putative C-terminus
sp_v2.0_unigene13123 SustainPine v2.0 596
AutoFact: Ribosomal protein S7 n=1 Tax=Cycas taitungensis RepID=B0BLH1_CYCTA 0.0
FL-Next: sp=30S ribosomal protein S7, chloroplastic; Pinus koraiensis (Korean pine). Plastid; Chloroplast. 0.0
Blast2go: ribosomal protein s7 0.0
N-terminus
sp_v2.0_unigene13242 SustainPine v2.0 807
AutoFact: Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI 1.0e-33
FL-Next: tr=Ribosomal protein S3; Abies holophylla (Neddle fir) (Manchurian fir). Mitochondrion. 0.0
Blast2go: ribosomal protein s3 8.04738e-41
Putative N-terminus
sp_v2.0_unigene13855 SustainPine v2.0 1456
AutoFact: 50S ribosomal protein L3 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 50s ribosomal protein l3 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain